Vitis riparia (riverbank grape): 117926557
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Entry
117926557 CDS
T07274
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03020
RNA polymerase
vri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117926557
09124 Replication and repair
03420 Nucleotide excision repair
117926557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117926557
03400 DNA repair and recombination proteins [BR:
vri03400
]
117926557
Enzymes [BR:
vri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117926557
Transcription machinery [BR:
vri03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117926557
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117926557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
117926557
NCBI-ProteinID:
XP_034701577
LinkDB
All DBs
Position
12:complement(18752947..18760854)
Genome browser
AA seq
1193 aa
AA seq
DB search
MYGEDEYDPTVVEEEEDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
DESADIEIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN
LTYSAPLYVDVTKRIIKKGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTE
LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPP
SSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD
TQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG
EYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD
VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY
ASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVG
SAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVD
VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHD
LVSKGFIEYVDTEEEETTMISMTINDLISARLNPEEAYSETYTHCEIHPSLILGVCASII
PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR
PNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHS
TSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED
MPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA
LHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS
FECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEVKPPKDQKKKGA
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgtacggtgaagacgagtacgatccaacggtggttgaggaggaggaggatgatgatgag
gagatcactcaggaagatgcctgggcggtgatcagtgcctactttgaagagaagggtctg
gtgaggcaacagcttgattcgtttgacgagttcattcagaatacgatgcaagaaatcgtg
gacgagtcagccgatatcgagattcgccctgaatcgcagcacaatcccggtcggcagtcc
gatttccttgagactatctataagataagttttggtcagatatacctgagtaagccaatg
atgacagaatctgatggagaaactgctactttatttccgaaagctgccaggttaaggaac
ttgacctactcagctccattgtatgtcgatgttacaaagaggattataaagaaagggcat
gaccttgaagaggtcactgaaactcaggagttcaccaaagttttcattgggaaggttcca
attatgcttcgatctagttattgcacggtgtaccagaactcagagaaagatttaactgaa
cttggagagtgtccttatgatcaaggtgggtacttcattattaatgggagtgaaaaggtt
ctgattgctcaagagaagatgagcaccaatcatgtgtacgtgtttaagaagaggcagcct
aacaaatatgcttatgtggctgaggttcggtctatggcggaatcccaaaacaggccaccg
agtagcatgtttgtccggatgctttcaaggactagtgccaaagggggatcttcggggcaa
tatatccgtgctacccttccatatatacggacagaaatcccaataatcattgtgtttcgg
gcattaggatttgtggccgacaaagatatattagagcacatatgctatgatttttctgat
actcaaatgatggagttacttcgcccgtccttagaagaggcatttgttattcaaaatcaa
caggttgcattggactacattggtaaaagaggatccactgtgggtgtcacgagggaaaag
aggatcaagtatgccaaggagatccttcaaaaggaaatgcttccgcatgtcggtgtgggg
gaatactgtgagactaagaaagcttactattttggatacatcattcatcggcttttactt
tgtgcgcttggccgaaggccggaagatgatagggatcactatgggaacaagaggctggac
cttgctggtcctttacttggaggccttttccgaatgttattcagaaagttaaccagggat
gtgagagcttatgttcagaagtgtgtggataatggaaaagatgttaacttacaatttgca
attaaagcaaaaacaattactagtggtctcaagtactctcttgctactgggaactggggg
caagcaaatgcagctggtactagagcaggagtatcacaggttttgaatcgtttaacatat
gcttccactctgtcgcacttacgaaggttaaactcacccattggtcgtgaaggaaaattg
gcaaaaccacgacagttgcacaattcgcactggggaatgatgtgtcctgcagaaacacct
gaaggacaagcatgtggactagtgaagaatcttgcattaatggtgtacataacagtagga
tctgcagcaaatcctattttggagtttttggaggagtggagtactgaaaattttgaggaa
atatctcctgcggttattcctcagtcaaccaaaatttttgtgaacggttgctgggttggc
attcatcgtaaccctgatctgttggtgaagactttgagacagttgaggaggcaggttgat
gtgaacactgaagttggagttattcgtgatatccgtttgaaggaactccgtctttacaca
gactatggacgctgcagtaggccattgtttattgtggagaaacaaagactgctaataaag
aagagagatatccgagccttacagcttagagaatcccctgaggatggtggatggcatgat
cttgtgtcaaaaggattcatagagtatgttgatactgaggaagaggagactacaatgatt
tccatgacaatcaatgatcttatttctgcaaggctcaacccggaggaggcttattctgaa
acttacactcactgtgaaattcatccctcattaatattaggtgtttgtgcatctattatc
ccattccctgaccataaccagtctcctcgtaatacctaccaatcagctatgggaaagcaa
gccatgggaatttatgtcaccaattaccagttacgaatggatacgttagcctatgttctg
tactatcctcagaagccccttgttactacccgtgccatggagcatttgcattttaggcag
ctgccagctggcataaatgccatcgttgccattgcctgctactctgggtataaccaagaa
gattctgttattatgaaccaatcatcaattgatcgtggattcttccggtcactattcttc
cggtcatatagggatgaggagaagaagatggggacactggtgaaggaggattttgggcgt
ccaaatcgggaaaacaccatgggaatgcgacatgggtcttatgataaattggacgatgat
ggtcttgcacctcctggcacaagagtctcaggtgaggatgtcattattggcaagaccaca
cctatttctcaagatgattctcagggacaagcttcacgttatacacggcgtgatcatagc
acaagcttacgtcacagtgaaagtggcatggtagatcaggttctgttgacaacaaatgca
gatgggttaaggtttgtgaaagtacggatgagatcagttagaataccacagattggtgac
aaattcagtagtagacatggtcagaaaggaactgttggcatgacttatactcaagaagat
atgccatggactgtggaaggcatcacccctgacatcattgtcaacccacatgctattcct
tctcgaatgacaattggccagcttattgagtgcatcatggggaaggttgctgctcatatg
gggaaggagggagatgctactcctttcacggatgtcactgtggacaatatcagtaaagct
ctccacaaatgtggttatcaaatgcgtggttttgagacaatgtacaatggtcatacaggc
cgacgattgactgctatgatattcctgggccctacttactaccagaggcttaagcacatg
gtggatgataagatccactcacgtgggaggggtccagtacaaatccttactagacagcct
gctgaggggcgatctcgtgatggtggtctccgttttggagaaatggaacgtgactgcatg
attgctcatggagcagcccacttcctcaaagaaaggttgtttgaccaaagtgatgcttat
agggttcatgtctgtgagcgctgtgggttgattgccattgcaaatctcaaaaagaactct
tttgagtgcagaggttgcaagaataaaaccgacattgttcaggtgcacattccatatgct
tgtaagctcctcttccaagagctcatggccatggccattgccccaaggatgcttacgaag
gaagtgaagccacccaaagatcaaaagaaaaaaggagcatga
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