Vitis riparia (riverbank grape): 117926596
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Entry
117926596 CDS
T07274
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117926596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117926596
03036 Chromosome and associated proteins [BR:
vri03036
]
117926596
Transcription machinery [BR:
vri03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117926596
Coactivators
SAGA/TFTC/STAGA complex
117926596
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
117926596
STAGA complex
117926596
TFTC complex
117926596
SAGA complex
117926596
SLIK complex
117926596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
117926596
NCBI-ProteinID:
XP_034701640
LinkDB
All DBs
Position
12:complement(18378478..18387132)
Genome browser
AA seq
543 aa
AA seq
DB search
MSIVSKETIEVIAQSIGIANLSADVALALAPDVEYRMREVMQEAIKCMRHSKRTVLTTDD
VDIALNLRNVEPIYGFTSGGPLRFKRAVGHKNLFYIDDKDLDFKDVIEAPLPKAPLDTAV
VCHWLAIEGVQPAIPENAPVEVIAAPSDGKKFEQKDDGLPVDIKLPIKHVLSRELQLYFD
KIIDLTVNRSDSALFKEALVSLATDSGLHPLVPYFTYFISDEVSRGLNDFNLLFALMRVV
WSLLQNPHIHIEPYLHQLMPSVVTCLVAKRIGNRLADNHWELRDFTANLVASICKRFGHV
YNNLQTRLTKTLLHAFLDPKRSMTQHYGAIQGLAALGPNMVRLLIVPNLEPYLRLLEPEM
LLEKQKNELKRHEAWCVYGALLRATGQSIYDRLKMFPALPSPPARVFRTNGRVVTSPPNK
RKANNEHLEQQPSLKKIATDGPMDVVPTNLPSNMQPPETEGPVPSTDPDMGPSSSSRQIP
HGNISDSRDRKGKGDSRALKMSAVLTQTWRDDLKSGHLLVSLFELFGESILPFIPAPEMS
LFL
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgagcattgtgtccaaggagacaattgaggtcatagcacagagcattggaattgccaat
ctgtctgctgatgttgcacttgcccttgctcctgatgtggaatatcgcatgcgtgaggtc
atgcaggaggcaatcaaatgcatgcggcactcaaagagaactgtattgacaacagacgat
gttgatattgcactcaacttaagaaatgttgagccaatttatggctttacctcgggaggt
ccgctgcggttcaaaagagctgttggacataagaatttgttttacatcgatgacaaggat
ttggatttcaaagatgtgattgaagctcctttaccgaaagcaccacttgatactgcagta
gtttgtcactggctggctattgaaggtgtacaaccagctattccagaaaatgctccagta
gaagtcattgcagctccttccgatggcaaaaagtttgaacaaaaagatgatgggcttcct
gttgacattaaattacccattaagcatgtattgtctagggagcttcagctatactttgat
aaaataattgatctaacggtgaataggtcagactctgccctttttaaagaggcattagtg
agcttggctacagactcaggacttcacccattagttccttattttacatacttcatctcc
gatgaggtatctcgtggtctgaacgatttcaacctcctgtttgctttgatgcgtgtggtt
tggagtcttcttcagaatcctcacatacacatagaaccttatctgcaccaattaatgcca
tctgtggttacctgccttgttgcaaaacgaattggaaatagacttgcagacaaccactgg
gaacttcgagacttcacagcaaacctggttgcttcaatatgcaaaagatttgggcatgtt
tataacaatctgcaaacgcggctgacaaagactctgctccatgcatttttagacccaaaa
cgttctatgacccaacactatggtgcaattcaaggtttagcagctctaggaccaaatatg
gttcgcctacttatagtgccaaatcttgaaccataccttcgacttcttgaacctgagatg
ctccttgagaagcagaagaatgagctaaagaggcatgaagcatggtgtgtttatggggcc
ttgctgcgtgcgacaggtcaatccatatatgatcggctcaaaatgttcccagctttgcca
tccccaccagcacgtgttttcaggaccaacggaagggtagttacatcaccaccaaataaa
cgcaaggcaaacaatgagcacttggagcagcagccatctctcaagaagatagcaacagat
ggcccaatggatgtggtgccaaccaacttgccatctaacatgcaaccgccagaaacagaa
ggtcctgttccttcgactgatcctgacatgggcccatcatcatcttccaggcagattcct
catggaaacatttcagatagcagagatagaaaaggtaagggtgatagtcgggctttgaag
atgtcagctgtcctcacccaaacttggagggatgacttgaaatctgggcatcttctggta
tcgctgtttgagttgtttggtgaaagcattttgcccttcattccagctcctgagatgtct
ttgttcttgtaa
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