Vitis riparia (riverbank grape): 117926773
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Entry
117926773 CDS
T07274
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03013
Nucleocytoplasmic transport
vri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117926773
03015 mRNA surveillance pathway
117926773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117926773
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117926773
mRNA cycle factors
P-body specific factors
117926773
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
117926773
NCBI-ProteinID:
XP_034701953
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All DBs
Position
12:2640539..2683705
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AA seq
519 aa
AA seq
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MKGPLDRTKVVVRHLPPTISEAAFLEQIDTVFKGRYTLVKFRPGKNSQKRQSYSRAYLDF
KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDGREGTIFKDPEYME
FVELLAKPVENLPSAEIQLERREAERAGAVKDTPIVTPLMDFVRQKRAAKGVSRRSLSNG
KLSRRASGSSSGNPSLGSSKRGSEKRRLSTTMYVLRDTAKNTSAKDKSTFILVPKRDDQL
LSDKSVNLAAGGGAEALEEESGVSGAVDAGKKKVLLLKGKEREISHHLLQQNVTSPVKNI
LGANAPKQNQRREGSGRIIRSILLNKDARQSQSSMFQMEQQSQASNLEKEKRPPRPPHIQ
LASKETNGAQDDKVVGNDVHSFVSEKQDKRTRNKDRPDRGVWTPLRRSDGSHASDESLSS
SASQPTSSDFPEGSLGEMRSDMSNARSGEVKALGSGRGGHSALDNGSHKHSGRRGPTHSV
KDADGSSIVSEGKHSKRGSAPGYGSHEKQVWVQKSSSGP
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtccgttggatcgaaccaaggtcgtggtccggcacttgccgccgacgatttcg
gaggccgcgtttttagaacaaatcgataccgtcttcaaggggcgctacaccttggtcaag
tttcgtcccgggaaaaacagccagaagcgacagtcctattctagagcctaccttgacttc
aagaggccagaggatgttattgagtttgctgagttctttgatgggcatgtttttgttaat
gagaaaggtactcagtttaaaactattgttgagtatgctccttcacaacgcattccaaaa
cattggcctaaaaaggatggccgtgaagggacaatatttaaagatcctgagtacatggag
tttgttgaacttcttgcgaagcctgttgagaatcttcccagtgcagaaatacaattggag
agaagagaagcagaacgagctggtgctgtgaaggacactcctatagttacgcctctaatg
gattttgtccgtcagaaaagagctgccaagggtgtatcccggagatcattatctaatgga
aaactaagcagaagggccagtgggtcatcatctggaaatccaagtctgggctcatcaaaa
cggggttctgaaaagagaagactctccaccacaatgtatgttttacgggatactgcaaag
aacacaagtgcaaaagacaagtcaacgttcattctggttccaaagcgagatgaccagctg
ctgtctgataagtctgttaatctagctgctggaggtggagctgaagcattggaagaggaa
agtggagtttctggagctgttgatgctgggaagaagaaagtcctcctcctgaaaggaaaa
gagagagaaatttctcatcatttactgcagcagaatgtaacatctccagtaaagaatata
cttggtgcaaatgctcccaagcagaatcagagacgtgaaggtagtggaaggataatcaga
agcatacttttaaacaaggatgcacgtcaaagtcaatcttctatgttccagatggagcaa
cagtcccaagcctctaacttagagaaggagaaacgacctcctcgccctccacacattcaa
ttggcttcaaaggagacaaatggagctcaagatgacaaggttgttgggaatgatgtgcat
agttttgtcagtgagaagcaggacaaacgtacaagaaataaggatagacctgaccgtggt
gtatggactcctcttcgccgttcagatggatcacatgcaagtgatgagtctttgtcatcc
tctgcttctcaacctacatcttcagattttcctgaaggaagtcttggagaaatgagatct
gacatgtcaaatgcaaggagtggtgaagtcaaagcacttggaagtggacgtggtggccat
tctgcattagataatggatcccataaacacagtggtcgccgtggaccaacacacagtgta
aaggatgctgatggctcttcaattgtaagtgaggggaagcattcaaaaagaggaagtgct
cctggatatggttcccatgagaaacaagtgtgggttcagaagtcaagttcaggtccttag
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