Vitis riparia (riverbank grape): 117927317
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Entry
117927317 CDS
T07274
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117927317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117927317
03012 Translation factors [BR:
vri03012
]
117927317
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117927317
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117927317
Translation factors [BR:
vri03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117927317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
Ank_2
ATPase
Ank_5
AAA_19
AAA_25
AAA_23
PhoH
Rad17
ABC_tran
AAA_7
NACHT
T2SSE
Motif
Other DBs
NCBI-GeneID:
117927317
NCBI-ProteinID:
XP_034702690
LinkDB
All DBs
Position
12:21808416..21842229
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AA seq
1189 aa
AA seq
DB search
MTRSGKKRQKDGEQNNPGVAEGTRIRISRALQEFRETHNEVYTFEANLTNHERAVVHEVC
RKMGMTSKSSGRASQRRVSVYKTKKKVDTKKEEGNPYLNFSEEAKEVLLDLFTRYPPDDT
EMVTQMVENGSGKTEKIWGKKDDIFGRPSMNKAEIAKKVELLASRIEEDPHLRQITEGRS
KLPIASFKDVITSTIESHQVVLISGETGCGKTTQVPQFVLDYMWGKGEACKIVCTQPRRI
SATSVAERISFEKGENVGDSVGYKIRLESKGGRHSSIIFCTNGILLRVLVSKGTDRLKPE
ALRKAAKRDISDITHIIVDEIHERDRYSDFMLAILRDMLASYPHLRLILMSATIDAERFS
QYFGGCPIIRVPGFTYPVKTFYLEDVLSILKSTGNNNLDSTLLSLPVEDPKLIEDYGVAL
DEAINLAWSNDEFDPLLDFVSSEGTPQVFNYQHSSTGLTPLMVFAGKGRVADVCMMLSFG
ADCHLKANDDTTALDLAERENHREAAEMIKQHMENLLSNSVEEQQLLDKYLATNNPEIID
VVLVEQLLRKICNDSKDGAILVFLPGWDDINRTREKLLSASFFKDSSKFVVISLHSMVPS
VEQKKVFKRPPPGCRKIVLSTNISETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSAW
ISKASAKQREGRAGRCRPGVCYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNC
KIEDFLRKTLDPPVFETIRNAVIVLQDIGALSVDEKLTELGKKLGSLPVHPLTSKMLFFA
ILLNCLDPALTLACASDYRDPFTLPMLPHEKKRATAAKAELASLYGGHSDQLAVIAAFEC
WKSAKEKGQEAQFCSQYFVSSGTMHMLAGMRKQLQTELIRNGFIPEDVSSCSLNARDPGI
IHAVLVAGLYPMVGRLLPPHKSGKRSVVETASGAKVRLHPHSNNFKLSFKKSDGRPLIIY
DEITRGDGGMHIRNCTVIGPLPLLLLATEIVVAPGKGNDDDDEDCDDDSDGDDIDEDDSE
GDGKEANNKLNGQQGEKIMSSPDNTVTVVVDRWLSFESTALDVAQIYCLRERLTAAIFFK
ATHAREVLPPMLGASVYAIACILSYDGLSGISLSLESVDSLTSMVNATEIDNSASGRRRM
GQNPNNFLKTLMSHGTRHKSPSKHHKNKGVENWNSPPTYNAWPPYVPHP
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgacgagatcagggaagaaaaggcagaaggatggagaacagaacaaccctggcgttgct
gaaggcactcggattcgaatctctagagcccttcaagagttccgagaaacacacaacgaa
gtgtacacatttgaagccaatctgacgaaccacgaacgtgctgtggtgcatgaggtatgc
aggaaaatgggcatgacatccaaaagttctgggcgtgcaagtcagcggcgtgtttctgtt
tataaaaccaaaaagaaggtggacactaagaaagaagagggaaatccttatttgaatttt
tcagaagaggcgaaagaagttttattggacctatttacacgttatccacctgatgataca
gagatggtcacacaaatggttgaaaatggtagtggaaagactgagaaaatatggggaaaa
aaggatgatatttttggcaggccctcaatgaacaaggcagaaattgcaaagaaagtggaa
ttgttagcttctaggatagaggaggatcctcacttgagacagattactgaagggaggtct
aagcttccaattgcttcctttaaggatgtcattacgtcaacaatagaatctcatcaggta
gtgctcatatctggtgagactgggtgcggaaaaaccacgcaggttcctcaatttgttttg
gactatatgtggggtaagggggaagcatgtaaaatagtatgtactcaacctcgacgtatt
tcagcgacatcagttgctgagagaatctcttttgagaaaggagaaaatgttggcgatagt
gttggatacaagatacggttggaaagcaaaggtggaaggcactcatctatcatattttgc
acaaatgggattctactgagagtcttggtctcaaaaggcactgataggttgaagccagaa
gctttacgcaaagcagcaaagagagatatttctgacataacgcacataattgtggatgaa
attcatgaaagggatcgctactctgatttcatgctagcaattctcagagacatgcttgcc
tcttaccctcatctacgtctgatactaatgagtgctactattgatgctgaacgattttca
caatattttggtggctgcccaataatacgagttcctggatttacttatcctgtcaaaaca
ttttatttggaggatgtactttctatcttgaaatcaacaggaaataataaccttgattct
actttgctaagcctcccagttgaggaccccaagttaattgaggactatggggttgcctta
gacgaagctattaatttggcttggtcaaatgatgagtttgatcctctacttgatttcgtt
tcttcggaagggaccccacaagttttcaattaccagcatagttcaactggactaacacca
ctaatggtgtttgctggaaagggtagagttgctgatgtttgtatgatgctatcttttggt
gctgactgccatttaaaagccaatgatgatacaactgcactggacttggcagaaagagaa
aatcatagagaagctgctgaaatgatcaaacaacacatggaaaatctcctttccaattct
gtggaggaacagcagttacttgataaatatctagcaactaacaaccctgaaattattgat
gttgtcctggtagagcagttactaaggaaaatatgcaatgactcaaaggatggagctatt
cttgttttccttcctggatgggatgatataaataggactcgggaaaaattactttctgcc
tccttttttaaagattcttctaagtttgtggtaatttctcttcattctatggtaccatct
gtggagcaaaagaaggtttttaaacgcccacctccaggttgccgcaaaattgttctctca
accaacatttccgagaccgccattaccattgatgatgttgtttatgtcatagacagtggt
cgaatgaaagaaaaaagttatgacccttacaataatgtatcaactcttcagtctgcttgg
atttcaaaagcaagtgctaagcaacgggagggacgtgcaggccgctgccgtcctggagtc
tgttatcatctttattctaaacttagagcggcatcgctaccagatttccaagttcctgaa
ataaagagaatgccaatcgaggaactctgtttgcaggtgaagttgcttgatccaaattgc
aaaatagaagatttcttgcggaagacattggaccctccagtttttgaaaccatacgcaat
gcagttattgttcttcaagatattggtgccttgtcggtggatgaaaagctgacagaactt
gggaaaaagctaggttctctaccagttcatccattaacaagcaagatgcttttctttgcc
atattgttgaactgccttgacccagctttgactcttgcatgtgcctctgactatagagat
ccattcactcttcccatgttaccacatgaaaagaagagagcgactgctgctaaagctgag
ttggcttcactttatggtgggcatagcgatcagctagcagtcatagcagcatttgagtgc
tggaagagtgcaaaggaaaaaggtcaagaagcacagttttgttctcaatactttgtttct
tcaggcacaatgcatatgctcgctggcatgcgtaagcagcttcagactgaactaatccgg
aatgggtttattccagaagatgtatcgagttgtagcctaaatgcaagggacccgggtata
atccatgctgtccttgtggctggtttgtatcctatggtgggaagattgctaccacctcat
aaaagtggaaaacgatctgttgtagagactgctagtggtgctaaagttcgcttgcaccca
cactccaataattttaaattgtcatttaagaaatctgacggtcgccctttgatcatatat
gatgaaataacccgaggggatgggggtatgcacataaggaattgtactgtcatcgggcca
ctcccattgttattgcttgcaacagagattgttgtggctcctggaaagggtaatgatgac
gatgatgaggattgtgatgatgacagtgatggtgatgatattgatgaagatgacagtgag
ggagatggaaaggaagcaaataataagttgaacgggcaacagggtgagaagattatgtcc
tctcctgataatactgttactgtggtggttgatcgatggctttcttttgagtcaacagct
cttgatgtagcccagatatactgcttgagggagcgactgactgcagcaattttcttcaaa
gcaacgcatgcccgtgaagttcttcctccaatgcttggggcttctgtctatgcaatagca
tgcatactatcttatgatgggttatcagggatctctttgtcattggaatccgtggactca
ctgacttcaatggtgaatgcaacagaaattgacaattctgcatcagggagaagacgaatg
ggtcaaaatccaaacaatttccttaaaacactaatgagccatggcacaaggcacaaatct
ccttccaaacatcacaaaaacaagggagtggaaaactggaacagtccaccaacctacaat
gcatggcctccatatgtgccgcatccttga
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