Vitis riparia (riverbank grape): 117927502
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Entry
117927502 CDS
T07274
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117927502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117927502
03041 Spliceosome [BR:
vri03041
]
117927502
03036 Chromosome and associated proteins [BR:
vri03036
]
117927502
Transcription machinery [BR:
vri03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117927502
Spliceosome [BR:
vri03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117927502
Complex B
117927502
Complex C
U2 SnRNP specific factors
117927502
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
117927502
TFTC complex
117927502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
117927502
NCBI-ProteinID:
XP_034702922
LinkDB
All DBs
Position
13:27085463..27091973
Genome browser
AA seq
1214 aa
AA seq
DB search
MYLYSLTLQQATGIVCAINGNFSGGKSQEIVVARGKVLDLLRPDENGKIQTILSVEIFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTVARLTISSPLEAHKSHTIVYSITGVDCGFDNPI
FAAIELDYSEADQDSTGQAASEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKSMFFFLLQ
TEYGDVFKVTLEHENDRISELKIKYFDTIPVTSSMCVLKSGFLFAASEFGNHGLYQFQAI
GDDADVESSSASLMETEEGFQPVFFQPRGLKNLVRIDQVESLMPIMDMKVSNLFEEETPQ
IFALCGRGPRSSIRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMVTGQLSDARSRFLGLRAPKLFSVIVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETVIPLRYTP
RKFVLQPKRKLLVVIESDQGAFAAEEREAAKKECFEAAGMGENGNGNVEQMENGGDDEDK
DDPLSDEQYGYPKAESDKWVSCIRILDPRTATTTCLLELQDNEAAFSICTVNFHDKEYGT
LLAVGTAKSLQFWPKRSFDAGYIHIYRFLEDGKSLELLHKTQVEGVPLALCQFQGRLLAG
IGSVLRLYDLGKRRLLRKCENKLFPNTIVSIHTYRDRIYVGDIQESFHYCKYRRDENQLY
IFADDSVPRWLTASYHIDFDTMAGADKFGNIYFVRLPQDVSDEVEEDPTGGKIKWEQGKL
NGAPNKVEEIVQFHVGDVVTCLQKASLIPGGGECIIYGTVMGSLGALLAFTSRDDVDFFS
HLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPG
EILKKLEEVRNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtcttacgctacagcaagccacaggtatagtttgtgcgattaatggc
aacttctccggtggaaagtcccaagaaattgttgttgccagaggcaaagttctcgacctt
ttgcgccctgacgaaaacggtaagatccaaacgattctctctgttgagatttttggtgcc
attaggtctttagctcagtttaggctaaccgggtctcaaaaggactatatcgttgttggg
tctgattctggtcgaattgtaattcttgaatacaacaaagagaagaacgttttcgataaa
attcaccaagaaactttcgggaaatcgggctgtaggcgaattgttccggggcagtatttg
gcaatagacccaaagggtcgtgctgttatgattggagcttgtgagaaacaaaaacttgtt
tatgtgttgaatcgagatacagtggcgaggttgaccatatcgtcgcccttggaggctcat
aagtcgcatactatagtgtattcgattactggggttgattgtggttttgataacccaata
tttgctgcaattgagttggattactctgaggcggatcaggattcgactggacaggcagca
agtgaggcccagaaacaccttactttttatgagcttgatcttgggcttaaccatgtgtct
aggaaatggtcggagcaggttgataatggagcaaatatgcttgttacagttcctgggggt
ggggatggaccaagtggtgttcttgtgtgtgctgaaaattttgtgatttataagaaccag
ggtcacccagatgtacgagctgtcatacctaggcgggcagatttacctgcagaacgtggg
gtgcttatagtttctgctgcaacacataggcagaagtcgatgttcttctttcttttgcag
acagaatatggagatgtttttaaggttactctggaacatgagaatgaccgcatctcggag
ttgaagattaagtattttgatacaatcccagttacatcttcaatgtgtgttctgaaatct
gggtttttatttgccgcatcagagtttggaaaccatggcttgtatcaatttcaggcgata
ggggatgatgctgatgtggaatcttcatcggcttcattgatggaaacagaagagggtttc
cagcctgtgtttttccagcctagaggacttaagaaccttgttaggatagaccaagttgag
agcttgatgccaataatggacatgaaagtctcaaatctcttcgaggaagaaactcctcaa
atatttgcactttgtgggaggggtccacgttcatctatacggattctgaggccaggtttg
gccatcagtgagatggctgtctcacagcttcctggtgtcccaagtgcagtttggacagtg
aaaaagaatgtcaatgatgagtttgatgcatatattgttgtttcgtttgcaaatgctact
cttgtgctttcaattggtgaaacagttgaagaagtaagtgatagtgggtttcttgatact
acaccatcccttgctgtttctttgataggtgatgattccttgatgcaagttcaccctagt
ggtatccgacatataagggaagatgggcgtattaatgagtggagaactcctggaaagagg
acaatcgttaaagttggttccaataggcttcaagtggttattgccctgagtggaggggag
cttatatattttgaggtggatatgactggtcagttgatggaggttgagaagcatgaaatg
tctggagatgtggcttgtttggacattgccccggttcctgaaggaagacagagatctcgt
tttctcgcagtcggatcatatgacaacactattcgtatcttgtctttggatcctgatgac
tgtatgcagattttgagtgtgcaaagtgtttcttctcctccagaatctcttctctttctt
gaggttcaggcatcagtaggtggtgaggatggtgctgatcaccctgctagtcttttcctt
aatgctggtttgcagaatggtgttctgttcagaacagtggtagatatggtgacaggtcag
ctctctgatgctcgttcccgattcttaggactgagagccccaaagctattctctgttatt
gtgagaggccgacgtgcaatgctatgcttgtcaagccgcccttggcttggttatattcac
caagggcattttctgttgacaccactttcttatgagacacttgaatttgctgcctcattt
tcatctgatcagtgtgctgaaggtgtggttgctgttgccggggatgcgctgagggtcttt
actattgaaagattgggtgaaacatttaatgaaactgtgattcctttaaggtatacaccg
agaaagtttgttcttcaacccaagcgaaaattattggtagttattgagagtgatcaagga
gcatttgcagcagaagagcgtgaagccgctaaaaaggaatgctttgaggctgctggaatg
ggggagaacgggaacggtaatgtggagcagatggagaatggtggtgacgatgaagataag
gatgatcccctctctgatgagcagtatggttatccaaaggcagagtctgacaagtgggtt
tcttgcatcagaattcttgatcctaggacagcaaccacaacttgtctgctggagcttcag
gataatgaggctgcatttagcatatgcactgtgaatttccatgataaagagtatggaact
cttttagctgtcggtacagcaaagtcactgcagttttggcccaaaagatcttttgatgcg
ggttatattcatatttataggtttttggaagatgggaaatcccttgaattattgcacaag
acacaagtggaaggtgttcctcttgctttatgccagttccagggaagattacttgctgga
ataggatctgtgctcagattatatgatttggggaaaagaagattgctcaggaaatgtgag
aataagctgtttccaaatacaatagtctctattcacacttatcgggacagaatttatgta
ggcgacattcaagagtcattccattattgcaagtatagacgggatgaaaatcaactgtat
atatttgctgatgatagtgttccaagatggctgacagcatcttaccacatagattttgac
accatggcaggagccgacaagtttgggaatatctattttgtgaggttgcctcaagatgta
tcggatgaggttgaagaagatcccactggtgggaagataaagtgggagcaggggaagctg
aatggtgctcccaacaaggtagaggagatagtacagttccatgttggtgatgtggtcaca
tgcttgcagaaggcatctctaataccaggtggtggagagtgcatcatctatgggacagtg
atggggagcttaggggcgttgcttgcgttcacctctcgggatgatgttgacttcttttct
cacttggagatgcatatgagacaggaacacccacctctgtgtggaagagatcacatggct
tacagatctgcttattttcctgttaaggatgtgattgatggggatctatgtgagcagttt
cctacactgcctctggatttgcagagaaaaattgcagatgaattggacagaactccaggg
gagatactgaagaaacttgaagaagttcgaaataagatcatttga
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