Vitis riparia (riverbank grape): 117927553
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Entry
117927553 CDS
T07274
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117927553
09123 Folding, sorting and degradation
03018 RNA degradation
117927553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117927553
03041 Spliceosome [BR:
vri03041
]
117927553
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117927553
mRNA degradation factors
5'-3' decay
Lsm complex
117927553
Spliceosome [BR:
vri03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117927553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
117927553
NCBI-ProteinID:
XP_034702994
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All DBs
Position
13:1563495..1568744
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AA seq
99 aa
AA seq
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MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPQKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaaggaaagaaacagttttggatctggcgaagttcgtggacaagggtgttcaa
gttaagcttactggtggaagacaagtaacagggacgctaaaaggttatgatcagttgcta
aaccttgtcttggatgaagctgtagagtttttaagagatccagatgatccacagaagact
acagatcaaaccaggcgccttggcctaatagtttgtaggggaactgcagtaatgctggtg
tcaccaactgatggcacagatgagattgctaacccttttatccagccagatggggcctag
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