KEGG   Vitis riparia (riverbank grape): 117927553
Entry
117927553         CDS       T07274                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03018  RNA degradation
vri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117927553
  09123 Folding, sorting and degradation
   03018 RNA degradation
    117927553
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vri03019]
    117927553
   03041 Spliceosome [BR:vri03041]
    117927553
Messenger RNA biogenesis [BR:vri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     117927553
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     117927553
Spliceosome [BR:vri03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    117927553
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 117927553
NCBI-ProteinID: XP_034702994
LinkDB
Position
13:1563495..1568744
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPQKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtcaggaaggaaagaaacagttttggatctggcgaagttcgtggacaagggtgttcaa
gttaagcttactggtggaagacaagtaacagggacgctaaaaggttatgatcagttgcta
aaccttgtcttggatgaagctgtagagtttttaagagatccagatgatccacagaagact
acagatcaaaccaggcgccttggcctaatagtttgtaggggaactgcagtaatgctggtg
tcaccaactgatggcacagatgagattgctaacccttttatccagccagatggggcctag

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