Vitis riparia (riverbank grape): 117927773
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Entry
117927773 CDS
T07274
Name
(RefSeq) probable pectate lyase 4 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri00040
Pentose and glucuronate interconversions
vri01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117927773
Enzymes [BR:
vri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
117927773
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
117927773
NCBI-ProteinID:
XP_034703334
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Position
13:complement(27123349..27126320)
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AA seq
331 aa
AA seq
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MASLPYADVDSNLRDLAGKAEGFGRLAIGGLHGPIYSVTTLADDGPGSLREGCRRQEPLW
IVFEISGTINLSSYLSVSSYKTVDGRGQRIKFTGKGLRLKECEHIIICNLEFEGGRGHDV
DGIQIKPNSRHIWIDRCSLHDYDDGLIDITRQSTDITVSRCYFSQHDKTMLIGADPSHIG
DRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWSVYAVCASVESQIYSQNNIYEA
GEKKVAFKYYTEMAADMEEAKSGLIRSEGDLFLNGAQSCLLTGIGEECIFHPSEYYPTWT
MEMASDSLKSVLQVCTGWQAIPRPAELMTSA
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgctgccctacgccgatgtcgattccaacctcagagatctcgccggaaaggct
gagggattcggccgattggccatcggcggcctccatggccccatctattccgtcactaca
ttggccgatgatggaccaggatcacttcgtgagggctgccgtagacaagaaccactttgg
attgtttttgaaatttcaggcaccattaatctttcatcctacttgagtgtatcatcttat
aagacggttgatggccggggccaaaggataaagttcacaggcaagggcctgagactcaaa
gaatgtgagcacataatcatatgcaacctggaatttgaaggtggtagaggacatgatgtt
gatggcattcaaataaaaccaaattctagacacatatggatagaccgatgcagcctgcat
gattatgatgatggacttatagatatcacccgccaaagcacagatattacagtttctaga
tgttacttctcacaacatgacaagacaatgcttattggagcagacccttctcacattggg
gacagatgcatccgggtgaccattcaccattgtttttttgatggaacgcggcaaaggcag
cctcgtgttaggtttggaaaagttcatctgtataacaattacaccagaaattggagtgtg
tatgctgtttgtgctagtgttgaatcacagatatactcccaaaacaacatctatgaagca
ggagagaagaaagtggcttttaaatattatacagagatggcagcagacatggaggaggca
aagtctggattaataaggtctgaaggggacttgttcctgaatggagctcaatcatgctta
ttaacaggaattggtgaagaatgcatattccatccaagtgaatattacccgacatggacg
atggaaatggcctcagattctctgaaaagtgtgctccaagtttgtaccggttggcaagcc
attcccaggccagcagagctaatgacaagtgcatag
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