KEGG   Vitis riparia (riverbank grape): 117928580
Entry
117928580         CDS       T07274                                 
Name
(RefSeq) protein RDM16 isoform X1
  KO
K12843  U4/U6 small nuclear ribonucleoprotein PRP3
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117928580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vri03041]
    117928580
Spliceosome [BR:vri03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    117928580
SSDB
Motif
Pfam: PRP3 Prp3_C
Other DBs
NCBI-GeneID: 117928580
NCBI-ProteinID: XP_034704388
LinkDB
Position
13:27283925..27290013
AA seq 884 aa
MDRSSEKEKSNRRSRESTKDHRDRNRDNRDSRENREHKHRSKEDDEDHRHHHSGGGGGGD
KHRSEKRSSRDDSKHRDADRHRSSDRGSKRERSHEREGSRDRVADEEVKREREGERSHDS
AHPHKRKERGESEDRGDGGEKRIRVSMERRERRRFEDRVEDVKESNGVERRERRKFEDRV
KEEDLGGFDEVKNVNFDEKSVKKEESEELGDAASNGSGSIGNGVVPEPLNMAPRLVPETS
LAPSLPPPTKVSSISTTNENKGVSITRSHEVPGKSSTDGTTSAAGKSGNLSLDALAKAKK
ALQMQKELSEKLKKIPLLNKGASSSSDGSPQLKPKEEVTLPSSTTGKLLGSVPLTTATEA
VSLVAMPSTSTLPAAAAASVMPSASGVGALAGLTSMPNFEAVKRAQELAAKMGFRQDPEF
APLINMFPGQMPTDVAVQQKPAKAPVLRLDALGREIDEHGNVVNMPKLNNLSTLKVNINK
QKKDAFQILKPELDVDPESNPHFDSRMGIDKNKLLRPKRMNFQFVEEGKWSRDAEIIKLK
SQFGEAQAKELKAKQAQLARAKAEPDINPNLIEVSERVIIKEKPKDQIPEVEWWDVPFLH
SGTYGDADSGITEDKLKMDKITIYLEHPRPIEPPAEPAPPPPQPLKLTKREQKKLRTQRR
LAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEMEIRSAAAEREQAHVD
RNIARKLTPAERREKKERKLFDDPNTLETIVSVYKINDLSHPQTRFKVDINAQENRLTGC
AVISDGISVVVVEGGSKPIKRYGKLMLKRINWAAAVENEDDDEDENEKPLNSCVLVWQGS
VAKPSFNKFNFHQCRTEAAARKVFSDAGVGHYWDLAVNFSGDQI
NT seq 2655 nt   +upstreamnt  +downstreamnt
atggataggtcttctgagaaagagaaatcgaacagacgaagcagggagtccaccaaggat
cacagagatcgcaatcgtgataatcgcgacagccgcgaaaatcgagaacacaagcaccgt
tccaaggaagacgatgaggatcaccgccatcaccacagcggcggcggcggcggcggcgac
aagcaccgaagtgagaaacgttcttccagagacgatagcaagcaccgcgacgccgatcgc
caccgatcctccgatcggggatcgaagcgcgagaggtcgcacgagagggagggcagtaga
gatagggttgccgacgaagaggtgaagagggagagggagggggagaggtctcatgattcg
gcgcatccgcataagaggaaagagcgcggggagagtgaggacaggggcgatggcggtgag
aagaggattagggtttcgatggagaggagggagaggaggcggttcgaggatagggttgag
gatgtgaaggaatcgaatggagttgagcggagagagaggaggaagttcgaggatagagtc
aaggaagaagatttgggaggttttgacgaagttaagaatgtgaattttgatgagaaaagt
gtgaagaaggaagagagtgaggagcttggtgatgccgcatctaatgggagtggttcaatt
gggaatggtgttgttccggaaccactcaatatggcaccaaggcttgtacctgagacctcc
ttggcccctagtctccctcctcctaccaaggtatcttcaatttctaccacaaatgaaaat
aagggagttagtattaccagatctcatgaggttcctggaaaatctagtacagatgggaca
acttcagctgctggaaaaagtggaaacctatcccttgatgctttagcaaaagctaagaaa
gctttacagatgcagaaggaattgtcagaaaagcttaagaagattcccctgttgaacaag
ggtgctagctcaagctcagacggtagcccacagttgaaacctaaggaagaggttacattg
ccatcttctactactggaaaactgcttgggtctgtccccttaactactgccactgaggct
gtctccctggtggcaatgccaagcacatcaactttacctgctgctgcagcagcttctgtg
atgccgtctgcaagtggcgttggtgctcttgctgggcttacatccatgcccaactttgaa
gctgtaaaacgtgctcaagagcttgctgccaagatgggatttcgccaggacccagagttt
gctcctcttataaacatgtttcctgggcagatgccaacagatgttgcagtccagcagaag
cctgctaaggcccctgtacttcgcttggatgcattgggtagggagatagatgagcatgga
aatgtagttaatatgcctaagctaaacaatctcagcaccctaaaggtcaacatcaacaag
cagaaaaaggacgcattccaaattcttaaacctgaattagatgtggatccggagtcaaat
cctcattttgattcaaggatgggtattgataaaaataagcttttgaggcctaagaggatg
aattttcagtttgtagaggaaggtaaatggtcaagagacgcagagattattaagttaaag
agtcaatttggagaggcacaagcaaaagagctaaaggcaaagcaagcacagctggcaagg
gccaaggcagagcctgatataaatccaaatttgatagaggtatcggaaagagttatcatc
aaagaaaaaccaaaggaccaaattcctgaagttgagtggtgggatgtgccttttttgcat
tctggaacttatggcgacgctgacagtggtataactgaagataaactaaagatggacaag
atcactatatatctggaacacccgcgtcctattgagcctcctgctgagcctgctccaccc
ccacctcaacccctaaagctaactaagagggagcagaagaaactccgaacacagcggcgt
ctggcaagggagaaagatagacaggaaatgataagacaaggcctcattgaaccaccaaaa
ccaaaagttaagatgagcaatctcatgaaagttcttggctctgaagcaacccaagatccc
accaggcttgaaatggaaattcgaagtgcagctgctgagcgtgaacaagctcatgttgac
aggaatattgcacgcaagctcacaccggctgaacgccgggaaaagaaagaaaggaaactt
tttgatgacccaaatacactggagactatagtttctgtgtacaagattaatgacctttca
caccctcagacccgttttaaggttgatattaatgcccaagagaaccgtttgactggatgt
gctgtgatttcagatggtattagtgttgtggttgttgaaggtgggagcaaacccatcaaa
aggtatgggaagcttatgcttaagcgtataaactgggcagcagctgtggaaaatgaagac
gacgatgaagatgaaaatgagaagcctctcaacagttgtgtgttagtatggcagggaagt
gtggctaaaccaagcttcaataagtttaattttcaccagtgcaggactgaagctgcagca
cggaaagttttttctgatgctggcgtgggtcactattgggatcttgctgttaacttctca
ggcgaccaaatataa

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