Vitis riparia (riverbank grape): 117928580
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Entry
117928580 CDS
T07274
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117928580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vri03041
]
117928580
Spliceosome [BR:
vri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
117928580
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
117928580
NCBI-ProteinID:
XP_034704388
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Position
13:27283925..27290013
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AA seq
884 aa
AA seq
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MDRSSEKEKSNRRSRESTKDHRDRNRDNRDSRENREHKHRSKEDDEDHRHHHSGGGGGGD
KHRSEKRSSRDDSKHRDADRHRSSDRGSKRERSHEREGSRDRVADEEVKREREGERSHDS
AHPHKRKERGESEDRGDGGEKRIRVSMERRERRRFEDRVEDVKESNGVERRERRKFEDRV
KEEDLGGFDEVKNVNFDEKSVKKEESEELGDAASNGSGSIGNGVVPEPLNMAPRLVPETS
LAPSLPPPTKVSSISTTNENKGVSITRSHEVPGKSSTDGTTSAAGKSGNLSLDALAKAKK
ALQMQKELSEKLKKIPLLNKGASSSSDGSPQLKPKEEVTLPSSTTGKLLGSVPLTTATEA
VSLVAMPSTSTLPAAAAASVMPSASGVGALAGLTSMPNFEAVKRAQELAAKMGFRQDPEF
APLINMFPGQMPTDVAVQQKPAKAPVLRLDALGREIDEHGNVVNMPKLNNLSTLKVNINK
QKKDAFQILKPELDVDPESNPHFDSRMGIDKNKLLRPKRMNFQFVEEGKWSRDAEIIKLK
SQFGEAQAKELKAKQAQLARAKAEPDINPNLIEVSERVIIKEKPKDQIPEVEWWDVPFLH
SGTYGDADSGITEDKLKMDKITIYLEHPRPIEPPAEPAPPPPQPLKLTKREQKKLRTQRR
LAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEMEIRSAAAEREQAHVD
RNIARKLTPAERREKKERKLFDDPNTLETIVSVYKINDLSHPQTRFKVDINAQENRLTGC
AVISDGISVVVVEGGSKPIKRYGKLMLKRINWAAAVENEDDDEDENEKPLNSCVLVWQGS
VAKPSFNKFNFHQCRTEAAARKVFSDAGVGHYWDLAVNFSGDQI
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggataggtcttctgagaaagagaaatcgaacagacgaagcagggagtccaccaaggat
cacagagatcgcaatcgtgataatcgcgacagccgcgaaaatcgagaacacaagcaccgt
tccaaggaagacgatgaggatcaccgccatcaccacagcggcggcggcggcggcggcgac
aagcaccgaagtgagaaacgttcttccagagacgatagcaagcaccgcgacgccgatcgc
caccgatcctccgatcggggatcgaagcgcgagaggtcgcacgagagggagggcagtaga
gatagggttgccgacgaagaggtgaagagggagagggagggggagaggtctcatgattcg
gcgcatccgcataagaggaaagagcgcggggagagtgaggacaggggcgatggcggtgag
aagaggattagggtttcgatggagaggagggagaggaggcggttcgaggatagggttgag
gatgtgaaggaatcgaatggagttgagcggagagagaggaggaagttcgaggatagagtc
aaggaagaagatttgggaggttttgacgaagttaagaatgtgaattttgatgagaaaagt
gtgaagaaggaagagagtgaggagcttggtgatgccgcatctaatgggagtggttcaatt
gggaatggtgttgttccggaaccactcaatatggcaccaaggcttgtacctgagacctcc
ttggcccctagtctccctcctcctaccaaggtatcttcaatttctaccacaaatgaaaat
aagggagttagtattaccagatctcatgaggttcctggaaaatctagtacagatgggaca
acttcagctgctggaaaaagtggaaacctatcccttgatgctttagcaaaagctaagaaa
gctttacagatgcagaaggaattgtcagaaaagcttaagaagattcccctgttgaacaag
ggtgctagctcaagctcagacggtagcccacagttgaaacctaaggaagaggttacattg
ccatcttctactactggaaaactgcttgggtctgtccccttaactactgccactgaggct
gtctccctggtggcaatgccaagcacatcaactttacctgctgctgcagcagcttctgtg
atgccgtctgcaagtggcgttggtgctcttgctgggcttacatccatgcccaactttgaa
gctgtaaaacgtgctcaagagcttgctgccaagatgggatttcgccaggacccagagttt
gctcctcttataaacatgtttcctgggcagatgccaacagatgttgcagtccagcagaag
cctgctaaggcccctgtacttcgcttggatgcattgggtagggagatagatgagcatgga
aatgtagttaatatgcctaagctaaacaatctcagcaccctaaaggtcaacatcaacaag
cagaaaaaggacgcattccaaattcttaaacctgaattagatgtggatccggagtcaaat
cctcattttgattcaaggatgggtattgataaaaataagcttttgaggcctaagaggatg
aattttcagtttgtagaggaaggtaaatggtcaagagacgcagagattattaagttaaag
agtcaatttggagaggcacaagcaaaagagctaaaggcaaagcaagcacagctggcaagg
gccaaggcagagcctgatataaatccaaatttgatagaggtatcggaaagagttatcatc
aaagaaaaaccaaaggaccaaattcctgaagttgagtggtgggatgtgccttttttgcat
tctggaacttatggcgacgctgacagtggtataactgaagataaactaaagatggacaag
atcactatatatctggaacacccgcgtcctattgagcctcctgctgagcctgctccaccc
ccacctcaacccctaaagctaactaagagggagcagaagaaactccgaacacagcggcgt
ctggcaagggagaaagatagacaggaaatgataagacaaggcctcattgaaccaccaaaa
ccaaaagttaagatgagcaatctcatgaaagttcttggctctgaagcaacccaagatccc
accaggcttgaaatggaaattcgaagtgcagctgctgagcgtgaacaagctcatgttgac
aggaatattgcacgcaagctcacaccggctgaacgccgggaaaagaaagaaaggaaactt
tttgatgacccaaatacactggagactatagtttctgtgtacaagattaatgacctttca
caccctcagacccgttttaaggttgatattaatgcccaagagaaccgtttgactggatgt
gctgtgatttcagatggtattagtgttgtggttgttgaaggtgggagcaaacccatcaaa
aggtatgggaagcttatgcttaagcgtataaactgggcagcagctgtggaaaatgaagac
gacgatgaagatgaaaatgagaagcctctcaacagttgtgtgttagtatggcagggaagt
gtggctaaaccaagcttcaataagtttaattttcaccagtgcaggactgaagctgcagca
cggaaagttttttctgatgctggcgtgggtcactattgggatcttgctgttaacttctca
ggcgaccaaatataa
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