KEGG   Vitis riparia (riverbank grape): 117928597
Entry
117928597         CDS       T07274                                 
Name
(RefSeq) cullin-4
  KO
K10609  cullin 4
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03420  Nucleotide excision repair
vri04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    117928597
  09124 Replication and repair
   03420 Nucleotide excision repair
    117928597
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:vri04121]
    117928597
   03400 DNA repair and recombination proteins [BR:vri03400]
    117928597
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:vri04147]
    117928597
Ubiquitin system [BR:vri04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     117928597
DNA repair and recombination proteins [BR:vri03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      117928597
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      117928597
Exosome [BR:vri04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   117928597
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 117928597
NCBI-ProteinID: XP_034704404
LinkDB
Position
13:11429757..11450696
AA seq 540 aa
MFTALGIYLESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLD
ASTRKPLVATAERQLLERHISAILDKGFMMLMDGNRIEDLQRMYLLFSRVNALESLRQAL
SSYIRRTGQGIVMDEEKDKDMVSCLLEFKASLDTIWEESFSRNEAFCNTIKDAFEHLINL
RQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKR
LLLGKSASIDAEKSMITKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPT
GIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLK
AEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDSTGIEDKELRRTLQSLACGKVRVL
QKLPKGREVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAA
IVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
NT seq 1623 nt   +upstreamnt  +downstreamnt
atgtttactgctctaggaatttatttggaaagttttgagaagccattcctcgagtgtacg
tctgaattttatgctgctgaaggcatgaaatacatgcagcaatcagatgttccggattac
ttgaaacatgtggagataaggttgcatgaagaacatgaaagatgcttactgtatctggat
gcaagcacaagaaagcccctggtagcaactgcagaaagacaactccttgaacgccacata
tctgcaattctagataagggtttcatgatgctgatggatggaaatcgaattgaggacctc
cagaggatgtatttactattttcaagggttaatgccctcgaatcactaagacaggccctt
agctcttacatccgaagaactgggcaaggaattgttatggatgaggaaaaagataaagat
atggtttcctgcctgctggaatttaaggcttctcttgatacaatatgggaagaaagcttt
tcaaggaatgaagcattttgcaacaccataaaagatgcatttgaacatctcattaatctc
cgtcagaaccgacctgctgagcttattgcaaagtttctggatgagaaacttcgtgctggg
aacaagggtacatctgaagaggagttggagggtacacttgataaagttttggttttattc
agatttatccagggtaaggatgtgttcgaagcattttacaagaaggatctggcaaaaagg
ctactgttggggaagagtgcatcaattgatgcagagaagtcaatgatcactaagttgaag
actgaatgcggaagtcagtttactaacaaacttgaaggaatgtttaaggacattgaatta
tctaaagagataaatgagtccttcaaacaatcatcgcaagccaggacaaaacttccaaca
ggaattgagatgagcgttcatgtcttaacaactggatattggcctacttacccacctatg
gatgttcggctcccgcatgaattgaatgtatatcaggacattttcaaggagttctacttg
agcaaatacagtgggaggcgattaatgtggcaaaactcattaggacactgtgttttgaaa
gcagagtttccaaaaggtaaaaaggagctggcagtttctctatttcagactgttgtcttg
atgctgtttaatgatgcgcaaaagcttagctttcaagatattaaggactctactggcatt
gaggataaggagctgagaaggactctgcagtcccttgcatgtggaaaagttcgtgtcctt
caaaagttgcctaaagggagggaagttgaggatgatgactcatttgtgttcaatgaaggg
tttactgctcctctctaccgtataaaagtaaatgcaatccaaatgaaggaaacagtggag
gagaacacaagcaccactgaaagagtgttccaggatcgtcaatatcaggttgatgccgct
attgtccggataatgaagacgaggaaagttcttagtcacacactattgattactgaactc
tttcagcagctaaaatttccaataaagccagctgatttgaagaaaaggattgaaagcctc
atcgacagggagtacctagagcgggacaaaaacaacccccagatatacaattacttggca
taa

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