Vitis riparia (riverbank grape): 117928629
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Entry
117928629 CDS
T07274
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117928629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vri03400
]
117928629
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
117928629
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
117928629
NCBI-ProteinID:
XP_034704457
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All DBs
Position
13:28303931..28311313
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AA seq
1263 aa
AA seq
DB search
MRKRNLCRNQHPFHAHPFEAFYFGSWQAIELMRIEDGTVALHLAESEYVIEEKSPIPNLR
IRPRKATLSDCTCFLRPGTEITVLWTLQQSESSDEENREPVWIDAKISSIERRPHEPECS
CQFFVNFYITQDPLGTEKGTLSKDISVVELDQISILQKLGKYPCEDEHYRWKFSEDCSLL
QRTKLFLGKFSSDLSWLVVTSVLKQVVFDVRSVQNRIVYQIVGGDHDKVSLNAVNFRVDN
GISTPVIFPFVPADTIEADPLNGTNETGPLPFCDIVDLRRSKRRNVQPDRFFSLGGFSES
DIGSVRAGIHKVDYWRKEEMPLALPDEGDVHSIFSEKHIIDYEKGAHSLQIDSYEDFLVC
KSKDRSREVKPILAAQNEDQHQFAIVPVPLIIEPIAHGEDHLHDETPWNESGEIGEISPK
YYCTNGVPKLQRKNMSDLYMEVESRWEGKGPIRKLRRKRGFTIRTKTESYGEVRPHKKRP
FSEPGYKEVIEAYMKNIESTINKEQPLVIDQWKELQVRNDLNQRRDCNLPSSVGDEEESS
ETEMLWREMEFSIASSYLLEENEGSNVEVLKEVVQESSNISEQVCQHEYILDEEIGVLCQ
LCGFVSTEIKDVSPPFFQPTGWITNKEWRDEENSKRKQAVNDGFNLFSIPASSDTPLSEG
NDNVWALVPDLRKKLRLHQKKAFEFLWKNIAGSMVPALMEQEVKRRGGCVISHSPGAGKT
FLVISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEIIKWKVPVPVYQIHGCRTYRYEIYKH
KVETSPGIPRPNQDVMHVLDCLEKIQKWHAHPSILLMGYTSFLSLMREDSKFIHRRYMGE
VLRQSPGILVLDEGHNPRSTGSRLRKALMKVKTNLRILLSGTLFQNNFSEYFNTLCLARP
KFVNEVLRELDPKFKRNKNRRKRRYSSTESRARKFFTDEIAKRINSNVPEEQIEGLNMLR
NLTSKFIDVYEGGSSDNLPGLQVYTLLMKSTTIQQEFLSKLQKKKDEYKGYPLELELLVT
LGSIHPWLITTAACADKYFSREELLELKKHKDDVKKGSKVKFVLSLVNRCIIRKEKILIF
CHNISPINLFVDIFDKLYKWKKGEDVLVLQGDLELFERGRVMDQFEEPGGASKVLLASIT
ACAEGISLTAASRVILLDTEWNPSKQKQAVARAFRPGQERVVYVYQLLETDTLEEEKNSR
TNWKEWVSSMIFSEAFVEDPSCWQAEKIEDDLLREIVEEDWAKSIHMIMKNEKASNGLIR
GKE
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgcggaagaggaatttatgtcgaaaccagcatccatttcatgcacatccttttgaggca
ttttactttgggtcatggcaagccatagaactcatgaggattgaggatggaacagtagcc
ctacatctggcagagagtgaatatgtaattgaggagaaaagtccaatcccaaaccttcgg
ataaggccaaggaaagcaactttgtctgattgtacttgctttctgaggcctggcacagaa
ataaccgtgctttggaccttgcaacagtcagaaagttcagatgaagaaaatcgagagccg
gtgtggattgatgctaagataagttccattgagaggaggcctcacgagcccgaatgttca
tgccaattttttgtcaacttctacattacccaagacccccttggcacagagaagggaaca
cttagcaaggatatcagtgttgtagaactcgatcagatttctatcctccaaaaacttgga
aaatatccttgtgaagatgagcactaccggtggaaattttctgaggactgctctttgctg
caaagaactaaattgttcttggggaaattctcatctgatctttcatggcttgttgttaca
tcagttttaaagcaagttgtatttgacgtaaggtcagtgcaaaataggattgtctatcaa
attgtgggtggtgatcatgataaggtttcattaaatgctgtaaattttagagtagacaat
ggaatttccactcctgtcatattcccctttgttcctgctgatactattgaggctgatcct
ttaaatggcaccaatgaaactggaccattaccattctgtgatattgtggacttacggcgc
tccaagcgtcgaaatgtacaacctgatcgtttctttagcttaggtggcttttcagagtcg
gatattgggtcagttcgagcggggatacacaaggtagactactggagaaaggaagaaatg
ccattggcattgccagacgagggggacgtgcattcaattttttcagaaaagcatattatt
gattatgaaaaaggggcccactctcttcaaatagattcctatgaggatttccttgtctgc
aaaagcaaggacaggtcaagggaggtaaagccaattctggctgcacaaaatgaagatcaa
catcaatttgctattgttcctgtgcctctcattattgaaccaatagcacatggagaagat
catctccatgatgagactccttggaatgagtcaggagagattggggagatatctcccaag
tattactgcacaaatggtgttcctaaattacagcgtaagaatatgtctgatttatatatg
gaggtcgagagcagatgggaagggaaaggtccaattaggaaactccgaagaaaaaggggt
tttactatacgtacaaaaacagagagttatggtgaagtaagacctcataaaaagagaccc
ttcagtgaacctgggtataaggaagtgatagaagcttacatgaaaaacatagaatccaca
atcaataaagaacagccacttgttatcgaccaatggaaagaacttcaggtgagaaatgac
ttgaaccaaagaagggactgcaacttaccatcttcggttggggatgaggaagaaagctca
gaaactgaaatgttgtggagagaaatggaattctccattgcatcatcttatcttctagaa
gaaaatgaggggtcaaatgttgaagtcttgaaggaggttgtgcaagaatcaagtaacatt
agcgaacaagtttgccagcacgaatacatattggacgaagaaattggggttctatgtcag
ttatgcggctttgtgagcactgaaataaaagatgtctcaccccccttttttcaacccact
ggttggatcacaaacaaagaatggcgtgatgaagaaaattcaaagcgtaagcaggctgta
aatgatggcttcaatcttttctccattcctgcttcctctgacacacccttgtcagaagga
aatgacaatgtgtgggccttagtacctgatctgagaaagaaattacggttacaccagaag
aaagcttttgagtttctatggaaaaatattgctggctctatggtaccagcactaatggaa
caagaagtcaagagaagaggtggttgtgttatttctcattctcctggagctggaaaaact
tttcttgttatctcgttcctggtgagctacttgaagttatttcctggaaaacggcctttg
gtccttgctccaaagacaacactctatacctggtacaaagaaattattaagtggaaggtt
cctgttccagtttatcaaatccacggttgtaggacctacagatatgaaatctacaaacac
aaagtggaaacttctccagggattccaagaccgaaccaagatgttatgcatgttcttgat
tgcctagagaaaatacagaagtggcatgcacatccaagtattcttctcatgggttatacc
tcgtttctgtcattgatgcgagaagattcaaagtttatccataggagatacatgggtgaa
gttctgcggcaaagtccaggaattcttgtactcgatgaagggcacaacccaagaagcaca
ggatcaaggttaaggaaagctctgatgaaagttaaaacaaacctgagaattttgctttca
ggtacattgtttcagaataatttcagtgaatatttcaacaccctttgcttagcaagaccg
aagtttgtcaatgaggtgttaagggaattggacccaaaatttaagaggaacaagaatcgg
aggaaaagaagatacagttcaacagaatctcgggcaagaaaattcttcacagatgagatt
gcaaagcgaatcaattcaaatgtgccagaagaacagatagagggcctaaacatgttaagg
aatctcactagtaaatttatagatgtgtatgaaggtggaagttctgacaacctacctggt
ttacaagtttacaccttgttgatgaaatcaactaccatacaacaagagtttctgtcaaaa
cttcagaagaaaaaggatgaatataaaggatatcctctggaattggagcttttggtaacc
cttggatcaatacatccttggttgatcacaactgctgcctgtgctgataaatactttagt
agggaggaattgctggagcttaagaagcacaaggatgatgtgaagaaggggtcaaaagtg
aaatttgttctaagtcttgtgaatagatgtatcattagaaaggagaagattttgatcttt
tgccataacatctcacccattaatttatttgtagatatatttgataagctctataagtgg
aagaagggtgaagatgttttggtccttcaaggggacctagagctatttgaacggggcaga
gtgatggatcagtttgaagaaccgggtggtgcctcaaaagtactacttgcttccattaca
gcttgtgctgaaggcattagcttaactgcagcttcacgggtgatattgttggacacagag
tggaatccttcaaagcaaaagcaagctgttgcacgggcatttcggcctggtcaggagagg
gtggtttatgtctatcagctcttggaaacagacacactggaagaagaaaagaatagtagg
accaactggaaggagtgggtttcaagtatgatatttagtgaagcatttgtggaggaccct
tcatgctggcaagcggaaaaaattgaagatgatttattaagggagatagtcgaggaggac
tgggctaaatcaatccatatgataatgaaaaacgagaaagcttcaaatgggttgatcaga
ggtaaagaatag
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