Vitis riparia (riverbank grape): 117929225
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Entry
117929225 CDS
T07274
Name
(RefSeq) protein FIZZY-RELATED 3
KO
K03364
cell division cycle 20-like protein 1, cofactor of APC complex
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117929225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
vri04121
]
117929225
Ubiquitin system [BR:
vri04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
APC/C
Target recognizing subunit
117929225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
EIF3I
WD40_Gbeta
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_Aladin
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
eIF2A
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
NBCH_WD40
Tricorn_2nd
MIOS_WD40
Beta-prop_HPS5
Aldo_ket_red
Beta-prop_SPT8
Beta-prop_VPS8
WD40_RFWD3
Beta-prop_RIG_1st
Beta-prop_IFT122_2nd
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
117929225
NCBI-ProteinID:
XP_034705388
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All DBs
Position
13:26028471..26031032
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AA seq
472 aa
AA seq
DB search
MDSSERRKSGLNLPAGMSETSLRLETFSGSYRAISNLSSPSKATSCSDRFIPCRSSSRLH
TFGLIEKASPVKEGGNEAYFRLLKQELFGSDFGSSSPAGQGSPMSPSKNMLRFKTDHSGP
NSPFSPSIFGPDSGFSSETSTPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLA
VGLGTCVYLWTASTSKVTKLCDLGPSDSVCSVQWTREGSYISIGTHLGQVQVWDGTQGKK
VRTMSGHQTRTGVLAWSSRILSSGSRDRNILQHDLRVSNDFVSKLVGHKSEVCGLKWSHD
DRELASGGNDNQLLVWNQHSQQPVLKLTEHTAAVKAIAWSPHQSGLLASGGGTADRCIRF
WSTTNGNQLNHVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMTKVATLTGHSL
RVLYLAMSPDGQTIVTGAGDETLRFWNIFPSMKTPAPVKDTGVWSMGRTHIR
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggattccagtgaaagaagaaaaagtggattgaatctcccagctgggatgtctgaaacc
tctctgcgccttgagactttttcgggttcctatcgggcgatatcaaacttgtcgtccccg
tcgaaagccacaagttgtagcgaccgattcataccatgcagatcttcgtcaaggcttcat
acttttgggctaatcgagaaggcatcgccggttaaggaaggcggaaacgaggcgtatttt
aggttgttgaaacaggagcttttcgggtctgattttggttcttcatctcctgcaggtcaa
gggtctccgatgagtcccagcaagaacatgctaaggttcaagacggatcattcggggcct
aattcgcccttttccccttccatttttggtcctgatagcgggttttctagtgagacttct
acgcctccaaagccgcctcggaaggtccccaagacaccccataaggttctggatgcccca
tcacttcaagatgatttctacttgaaccttgtggactggtcttcacagaatgtgcttgca
gttggattgggcacctgtgtttatctatggactgcatccaccagcaaggtgaccaagttg
tgtgatttggggcccagtgacagtgtgtgctcggtccaatggacccgagagggttcatac
atatcgattggtacacatcttggtcaagttcaggtgtgggatggaactcagggcaagaag
gtccgaaccatgagcggacaccaaacaaggaccggagtcctggcttggagctcgcggata
ttatcttctggaagtagagaccgcaacatacttcaacacgatcttcgtgtttcaaatgac
tttgttagcaagcttgtagggcacaaatccgaagtgtgtgggctgaaatggtcccatgat
gatagagaacttgcatcaggtggtaatgataatcagctattggtgtggaaccagcattct
cagcaaccagttttgaagttgacagagcacacagctgctgtgaaggccatagcttggtca
cctcaccagagcggcctccttgcgtccggaggtgggactgcagaccggtgtatccgcttc
tggagtactacaaatgggaatcaattaaaccatgttgacacaggaagccaggtatgcaat
ctggcatggagtaagaatgtgaacgagctagtcagcactcatggctattcccagaatcag
attatggtctggaaatacccatcaatgacaaaggttgcaactctaactggccatagtttg
cgagtgctctatcttgccatgtcgccggatggtcagacgatagtaacaggagcaggggat
gagacattacggttttggaatatcttcccttccatgaaaacaccagcaccagtcaaagat
acaggtgtttggtcaatgggacggacgcatattcgatga
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integrated database retrieval system