Vitis riparia (riverbank grape): 117929249
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Entry
117929249 CDS
T07274
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117929249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117929249
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117929249
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_EML
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_DCAF4
eIF2A
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_WDR75_1st
NBCH_WD40
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_Vps41
Pep3_Vps18
WD_LRWD1
WD40_like
WDR54
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
117929249
NCBI-ProteinID:
XP_034705410
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Position
13:complement(5172616..5213952)
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AA seq
770 aa
AA seq
DB search
MMYGDPQQQMQQQQQQQQMHQQQQMHQQQQMHQQQQMQQQQQGGDFHRGPLPPPPSQPQP
PQSQLPPPPPMMRQPSASSTNLAPEYHHPSAPPYDAHADSFAAKRMRKLAQRRAVDYTST
VVRYMQVRMWQRDSRDRTVLQPTPAAAIDLLPAVAYSDNPSTSFAAKFVHTSLNKNRCSI
NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNENWMVTGDDG
GSIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEDRSLS
GHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGRELCSFHGHKNTVLCVKWNQNGNWV
LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEDYFVSGSFDGSIFHWLVGHE
TPQVEIPGAHDNSVWDLAWHPIGYILCSGSNDHTTKFWCRNRPGDTVRDKFNMGHNQGYG
EQNPALGGRMPGNFQVPETPTTPGPFAAGLTRNEGTIPGVGVAMPLTIPSLDTSAQGEQK
QPLPVSIPLGAPPLPPGPHPSLLAANQQQAYQQNPPQMPQHHQALPQQMPPLPLQPPNMS
QLQPPSHLPLLPHPHLPRPPPQLPPMGMPSNIPSSMPGSLPMPSMPTSLPLQMPAPMGMQ
GAMNQMGPPMPQGHFMGMNPMHAGSLPTGGVPPPIGSFQGGAQMYAPGGSFNRAPAGQMP
MMPGLNPYQSGNPNPSGSGMGTLPSNMGHPSGMAPPPPPPGPPPHGQPTQ
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacggtgatcctcaacagcagatgcagcagcagcagcagcagcagcagatgcat
cagcaacagcagatgcatcagcaacagcagatgcaccagcaacagcagatgcagcagcag
cagcaaggcggagactttcacaggggcccactgcccccaccaccgtctcaaccacaacca
ccgcaatcgcaactgccacctcctccgccgatgatgcgccagccctcggcttcatccacc
aatctcgcccccgagtatcaccatccatccgctcctccttatgacgctcatgccgatagt
tttgctgcaaaaagaatgagaaagctggcccaaagaagagcagttgattatactagcact
gttgtacgatacatgcaggttcgcatgtggcaacgagattcaagggacaggacagtattg
caacctaccccagctgcagcaattgatttgttgccagcagttgcttattcagataatcca
tccacaagttttgctgcaaagtttgttcatacatctttaaacaaaaatcgttgttcaatt
aatcgagttctgtggactcctactgggagacgtcttatcacaggctcacaaagtggggaa
tttactctttggaacggacagtcatttaattttgaaatgattcttcaggctcatgatcaa
gcaatcaggtctatggtatggagtcataatgagaactggatggtcactggtgatgatggg
ggctcaataaagtattggcaaaacaacatgaataatgtaaaggcgaataaatctgctcat
aaagaatcagttcgtgacttaagcttctgtcggacagatttaaagttctgttcctgctct
gatgatactactgttaaagtttgggactttgctcggtgccaggaggaccgttcactatct
ggccatggttgggatgtgaagagtgttgattggcaccctacaaagtccttgctagtttca
ggtgggaaagacaacctcgtgaaactttgggatgccaaaacaggaagagagctttgttca
tttcatggccataaaaacactgtgctctgtgtcaaatggaatcaaaatggtaactgggtg
ctaactgcttcaaaagatcaaatcatcaagctttatgacataagggctatgaaggagctt
gaatccttccgtgggcatcggaaggatgtgactgcattggcttggcatccatttcatgaa
gactattttgtaagtggaagttttgatggatccattttccattggctagtcgggcatgaa
accccccaggttgaaattcctggtgcccacgataatagtgtttgggaccttgcctggcat
cctatagggtatattctttgcagtggaagcaatgatcatacaacgaaattttggtgtaga
aataggccaggagataccgttcgtgataaattcaacatggggcacaaccaaggttatggt
gagcaaaaccctgcacttggtggtcgcatgcctggtaatttccaggtacctgaaacccca
acaactccgggtccatttgcagctggattgacccgaaacgagggaaccattccaggtgtt
ggagttgcaatgccattaactatcccatctcttgatacatcagctcaaggagagcagaag
cagcctcttcctgtttcaattcctttaggggcacctcctcttccgcctggtcctcaccca
tcccttcttgcggccaaccagcagcaggcatatcaacaaaatcctcctcaaatgccacaa
caccaccaggcactcccacagcaaatgcctcctttgcctctgcagccaccaaatatgtca
cagctacagcctccttcccatttacccctgctaccacatcctcacttacctcgccctcct
ccccagttgcccccaatgggtatgccttcaaatattccgtcttctatgccaggatccttg
cccatgccttcaatgcccacatcacttccactgcagatgcctgctccaatggggatgcaa
ggtgcaatgaatcagatgggtcccccaatgccacaaggccattttatgggcatgaatcca
atgcatgcaggatccttacccactggtggtgtacctcctcccattggaagtttccagggt
ggggctcaaatgtatgcaccaggtggttcattcaaccgagctccagctggacaaatgcca
atgatgcccgggctgaatccctaccagtccgggaatccgaatccaagcggaagcggcatg
ggaacactgccatcaaatatgggtcatccatctggtatggctccgccgccaccaccaccg
ggtccgccgccgcatggccaaccaacacaatag
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