Vitis riparia (riverbank grape): 117929709
Help
Entry
117929709 CDS
T07274
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117929709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vri03041
]
117929709
03009 Ribosome biogenesis [BR:
vri03009
]
117929709
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117929709
Spliceosome [BR:
vri03041
]
Complex A
U1 snRNP components
U1 related factors
117929709
Complex B
117929709
Ribosome biogenesis [BR:
vri03009
]
Eukaryotic type
Pre-60S particles
Helicases
117929709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
117929709
NCBI-ProteinID:
XP_034705980
LinkDB
All DBs
Position
14:2780366..2786773
Genome browser
AA seq
862 aa
AA seq
DB search
MAATATVXRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPERPGASSNASLAP
PAKSSASISSSVQVQQSSQGQRRDHGLNEEDDKYNRARNLQSARGGTVHSHDPPNGIVGA
GHGGSSVRGQGSSGPGSGASTESYRRRHEITVTGDDVPQPFTSFESTGFPPEIIREVYSA
GFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQMGPTVLVL
SPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRGADIVVATPGRLNDILE
MRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAADL
LVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSKIIIFCSTKKMC
DQLARNLTRPFGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLDIKDIRVVIN
YDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLEGANQRVPPEIRDMA
SRGGGMGRSRRWGSGTGGRDGGRGGRNDSSYGGRDGGRGGWGMAPSSSSRLERGGGRGAD
QDQRDRDRYDHSYHDGHDFDTRSRYDRGYHASSIRAGERDRARSRSRSQSPNKGQAYGDA
RSRSRSRSKSRSRSRSLERYNKAPPVRERSPVHSFHKSAMEQARSPHGRYVSPYNNDNVR
ERSPMRSFHKSAMEQKPQSSPPPQRQRVSPYNKDGTRGFTNSVNARGSSPERSQSPPGAA
GVGKEKLKASDGDGGGKDKLRAPYDDTPQDWQRSPGGGQDGVGYANGHRASYLGEEEEEG
MIPADDDGTFQAPTADPHQSSP
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaaccgcaactgtcncacgttatgcaccagaagaccctactcttcccaaaccg
tggaaaggcctggttgatgggaaaacagggtatctttacttttggaatccagagaccaat
gtaacccagtatgagaggcctgagaggcctggtgcttcttcaaatgcaagtttagcacca
cctgcaaagtcttcagcatccataagttcttcagttcaagttcaacaatcttctcaagga
cagcgtcgtgaccatggtctgaatgaagaagatgataagtataacagagcaagaaatctt
cagagtgccagaggtgggacagttcattctcatgatccacctaatgggattgttggtgct
ggacatggagggtcttctgttagaggacaaggatcctcaggcccagggagtggtgcatca
acagagtcctatcgccgtcggcatgaaataacagttacaggagatgatgttccccaacct
ttcacatcatttgaatctacgggctttcctccagagattattagagaggtatacagtgct
gggttctctgcccctactccaattcaggcacagtcttggccagttgctcttcaaagtcgt
gatatagtggccattgctaagacgggttcagggaaaacactgggctacctaattcctggc
tttattcatctcaaacgcatccgcaataatccccaaatgggtccaactgttttggtactc
tcaccaactagggagttggcaacacagatacaagatgaagctgtgaagtttggaagatca
tcaagactttcatgcacgtgtttgtatggaggagcaccaaagggtccccagttgagagat
ctagacagaggagcagatatcgtggttgctactcctggccgcttgaatgatatactggaa
atgagaagagtcagcctccgtcaagtgtcttatctggtgctggacgaggcagaccgaatg
ctggacatgggttttgaacctcagattcgaaagattgtgaaagaggtacccgctcgccgg
cagactctcatgtacactgcaacatggccgaaggaggttcggaagattgcagcagatcta
ctagttaatcctgttcaggttaacattgggaatgttgatgagcttgttgcaaacaaggcg
atcactcagtatgttgaagtattgccatatatggagaaacacaagcggttggagcagata
ttgcgctctcaagaaccaggatccaagattatcattttctgttcaactaagaagatgtgt
gatcaactggctcggaacctaacccgcccctttggagctgctgccattcatggagacaaa
tctcaaggtgagagggattatgtattgaatcagttccgcactgggaggtccccggtactt
gtggccaccgatgttgcagctcgaggacttgacattaaggatatcagggtggttatcaac
tatgatttcccaactggagtagaggattatgtgcacaggattggaaggactggtagggca
ggtgccactggagttgcttacacattctttgcagagcaggatgcaaagtatgcttcagat
cttgtcaaagttctagaaggggcaaaccagcgagtccctccggagattcgtgatatggct
tcacgtggtggtgggatgggcaggtctaggcgttggggctctggtactggtggtcgtgat
ggaggccgtggtggacgaaatgattcaagttatggtggtagggatggtggaaggggtggc
tggggaatggctccatcatcttccagtaggttggaaagaggtgggggccggggagctgac
caagatcaacgtgacagggacaggtacgaccacagttatcatgatgggcatgattttgat
actcgttcaaggtatgataggggttaccatgcaagtagtatccgggctggagaaagggat
agagctcgtagccgaagtagaagtcagagccccaacaaggggcaggcttatggtgatgcc
cggagcaggagccgcagtcgaagcaagtctcgcagccggagtcgtagccttgaaagatac
aacaaggctccacctgtacgtgaacggtccccagtgcacagttttcataaatcagccatg
gagcaggctcgttcaccgcatggtcgatatgtttcaccttacaacaatgacaatgttcgg
gaacgctctcccatgcgcagtttccataaatcagccatggagcagaagcctcagtcatca
ccaccaccacagcggcagcgtgtttcaccttacaacaaagatggtacaaggggtttcaca
aattctgtgaatgcacgtggttcttccccagagagatcacagtccccacctggtgctgct
ggtgtagggaaggaaaagttgaaggcgtctgatggtgatggtggcgggaaggacaagctc
agggcaccatatgatgatactccacaggactggcaaagatcaccaggtggtgggcaggat
ggtgtaggttacgccaatggccatcgagcttcttatttaggtgaagaagaagaggaaggc
atgattccagctgatgacgatggaacatttcaagcacctactgcagacccccatcagtca
tctccttaa
DBGET
integrated database retrieval system
