Vitis riparia (riverbank grape): 117929790
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Entry
117929790 CDS
T07274
Name
(RefSeq) THO complex subunit 4D isoform X1
KO
K12881
THO complex subunit 4
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03013
Nucleocytoplasmic transport
vri03015
mRNA surveillance pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117929790
09122 Translation
03013 Nucleocytoplasmic transport
117929790
03015 mRNA surveillance pathway
117929790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117929790
03041 Spliceosome [BR:
vri03041
]
117929790
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117929790
TREX complex
117929790
Spliceosome [BR:
vri03041
]
Complex C
Other components
EJC/TREX
117929790
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117929790
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_11
YHR127W_C
Motif
Other DBs
NCBI-GeneID:
117929790
NCBI-ProteinID:
XP_034706089
LinkDB
All DBs
Position
14:complement(13423120..13434895)
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AA seq
269 aa
AA seq
DB search
MATSLDMSLDDIIKRSNSERVRGRGRARRGRGPIGGSFNGGRMSGIPPRRGPLRVNARPS
SYAIAKSSRRTKIPWQHDLFEDSLRAAGLPGLEAGTKLYISNLDYGVTNEDIRELFSEIG
DIKRYAVHYEKNGRPSGSAEVVYTRRSDAFAAVKRYNNVLLDGKPMKIEIIGSDSDVPVS
ARVNVIGGVNGKRRRTVVMTPGVGHARGSTAINRSSSRRGRGGLSNGRGRGRAGSRGRGR
GRGRKQPVEKSAVELDKELDNYHAEAMHT
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atggctacttccttggatatgtcacttgatgatataataaagaggagtaacagcgagaga
gttagaggacggggtagagctcgccgtggtcgagggccaataggagggtcttttaacggt
ggaagaatgtcaggaattcctcctcgtagaggtcctcttagggtgaatgctcggccatca
tcttacgcaattgccaagtcatcccgcagaaccaagattccatggcagcatgatctgttt
gaagatagccttcgagctgcagggttgcctggtttagaagctggcacaaagttgtatatt
tccaacctggactatggtgtgaccaatgaagatataagggaacttttctctgagattgga
gacataaaaagatatgcagttcattatgagaaaaatggacgcccaagtggttcagctgaa
gtagtttataccagaagaagtgatgcatttgctgctgttaaacgatataataacgttctt
ttggatggaaagcctatgaagattgaaattataggaagtgattcagacgtgcctgtttct
gctcgtgtgaatgtaattggaggggtaaatggaaagaggagaaggacagttgttatgacg
cctggagtgggtcatgccagaggctccactgcaatcaatcgtagttctagtcgaaggggt
cgtgggggtttgagcaatggccgtgggcgtggccgtgctggtagtcggggtcgtggccgt
ggccgtgggaggaagcaacctgttgagaaatcagctgttgaactcgacaaagaactggac
aattaccatgctgaagccatgcacacttga
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