Vitis riparia (riverbank grape): 117930281
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Entry
117930281 CDS
T07274
Name
(RefSeq) ubiquitin receptor RAD23c-like isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03420
Nucleotide excision repair
vri04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117930281
09124 Replication and repair
03420 Nucleotide excision repair
117930281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
vri03051
]
117930281
03400 DNA repair and recombination proteins [BR:
vri03400
]
117930281
Proteasome [BR:
vri03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
117930281
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
117930281
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
Rad60-SLD
UBA_7
CUE
UBA_RAD5A
Rad60-SLD_2
Ubiquitin_2
TECR_N
Dsc3_N
UBA_3
Ubiquitin_4
Permuted_GreAB-C
Motif
Other DBs
NCBI-GeneID:
117930281
NCBI-ProteinID:
XP_034706735
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Position
14:complement(9418305..9429401)
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AA seq
381 aa
AA seq
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MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGMDVYPAAQQMLIHQGKVLKDATTLD
ENQVAENSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTSNQPSTAPQAPVVALP
EVIPEPAPAVAPSISSDSDIYGQAASNLVAGNNLEVTIQQILDMGGGSWDRDTVVRALRA
AYNNPERAVEYLYSGIPEQAEGPPAAQPPASGLAVNLPTQAPQGPQTTVASSGPNANPLD
LFPQGLPSMGSNASAGTLDFLRNSPQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQ
EHQADFLRLINEPVEGEGNVLGQLGTVPQAVTITPEERESIERLEAMGFDRALVLEVFFA
CNKNEELAANYLLDHMHEFEE
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgaagatttttgttaagactctcaagggcactcacttcgagatcgaagtgaaacccgaa
gacacggttgcagatgtgaagaaaaacattgagttggtgcatggtatggatgtttaccct
gctgcacaacaaatgcttatccatcagggaaaagtcttgaaggatgccacaacactggat
gaaaatcaagttgctgaaaatagctttgttgtcattatgctatccaagaataaggtctca
gcaggtggagcctcaaccacatctgctgcacctacaagtcaggcccaacctgtgagttct
tcaccccctacttcaaatcagccatctacagctcctcaagctcctgttgtagccttgcca
gaagttattcctgaacctgcccctgctgtagcgccttctatttcttcagattctgatatc
tatggacaagcagcatccaatcttgttgccgggaataacttagaggtcaccattcaacaa
attcttgacatgggcggaggaagttgggacagggacacagttgtccgtgctctacgtgct
gcatataacaacccagagagagctgttgaatatctatattctggtattcctgaacaagct
gaaggcccacctgcggcccaaccacctgcaagtgggctggctgtgaacctaccaactcag
gctccacaaggaccacagacgacagttgcttccagtgggcccaatgcaaaccctctggat
ctgtttccgcagggtcttcctagtatgggttcaaatgctagtgcgggcaccttggatttc
cttcgcaacagtccacagttccaagcattgagagccatggtgcaagcaaacccccaaatc
ttgcagcctatgcttcaggagctaggaaagcaaaatccacatctgatgcgactcattcaa
gagcatcaggctgactttctgcgcctgatcaatgaacctgtggaaggagaggggaacgta
ctagggcagctgggaacagtgccacaggcggtgaccatcacacctgaggagcgcgaatcc
attgaacgtcttgaagcaatgggttttgatcgggccctagtgttggaggtgttttttgca
tgcaacaagaatgaggagctagcggcaaactatcttttagaccatatgcatgagtttgaa
gagtga
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