Vitis riparia (riverbank grape): 117930323
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Entry
117930323 CDS
T07274
Name
(RefSeq) phytochrome A1
KO
K12120
phytochrome A
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
117930323
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
Motif
Other DBs
NCBI-GeneID:
117930323
NCBI-ProteinID:
XP_034706810
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Position
14:complement(29652218..29659240)
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AA seq
1124 aa
AA seq
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MSSSRPTQSSSTSGRSKHSARIIAQTTVDAKLHADFEESGSSFDYSSSVRFTPAGGDQQP
RSDKVTTAYLHHIQKGKLIQPFGSLLALDEKTFKVIAYSENAPEMLTMVSHAVPSVGEHP
VLGIGTDVRTIFSGPSASALHKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIID
FEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSLERLCDTMVQEVFELTGYDRVMA
YKFHDDDHGEVVSEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHIQVL
QDEKLPFDLTLCGSTLRAPHSCHVQYMENMNSIASLVMAVVVNDGDEEGESSNSGQPQKR
KRLWGLVVCHHTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCD
MLMRDAPLGIVSQSPNVMDLVKCDGAALLYKNKVWRLGITPSDFQLHDICSWLSEYHMDS
TGLSTDSLYDAGYPGALALGDAVCGMAAVKITSKDTLFWFRSHTAAEVRWGGAKHEPGEK
DDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSEAMDVNTNAIHT
KLNDLKIEGMQELEAVTSEMVRLIETASVPILAVDVDGLVNGWNTKISELTSLPVDKAIG
MHLLTLVEDSSADTVKKMLHLALQGQEEQNVQFEIKTHGSKRDSGPISLVVNACASRDLL
ENVVGVCFVAQDITSQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAM
VKLSGWNREEVMDKMLLGEVFGTHMACCRLKNREAFVGLGIVLNSVMTGRESEKVSFGFF
SKSGKYVECLLSVSKKLDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKALAY
IKRQIKNPLSGIIFSRKMMEDTDLGEEQQQILHTSAQCQRQLSKILDDHDLDSIIEGYLD
LEMVEFTLREVLVASISQVMIKSNGKGIQIVNDAEEGIMTETLYGDGLRLQQVLADFLLI
SVNFTPGGGQLSVAASLIKDRLGESVHLVHLELRITHAGNGVPEQLLNQMFGNNGDASEE
GISLLISRKLVKLMNGDVQYLREAGKSTFIISIELAAARKKPQA
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttctagacccactcagtcatccagcacttcaggtcgatcaaaacacagtgct
aggattattgctcagaccaccgtggatgcaaagctacatgcggattttgaggagtcaggt
agttcatttgactactcaagttcagtgcgttttactccagctggtggagatcaacagccc
agatctgacaaagtaacaacagcttacctccatcacatacagaaaggcaaactgatccaa
ccatttggctctttgttagccctagatgagaaaactttcaaagtcattgcctacagtgaa
aatgcccctgaaatgttgacaatggttagtcatgcagtcccaagcgttggtgagcatcca
gttctgggcattggtactgatgtgaggaccatcttcagtggccccagtgcatctgcactg
cacaaggccttaggatttggagaggtttctcttctgaatcccatcttagtccattgcaaa
acctcagggaagcccttttatgcaatcatccatagggtcactggtagcttgatcattgac
tttgaaccggtgaagccttacgaagttcccatgactgctgctggtgccctgcaatcctat
aagcttgcagcgaaagcaatcacgaggttgcagtcactgcctagtggtagcttggaaagg
ctttgtgatacaatggttcaagaggtttttgaactcactggttatgacagggtgatggct
tataaatttcatgatgacgaccatggggaggttgtctctgagataacaaagccaggcctt
gagccatatctgggtttacattatcctgccacagatatccctcaggctgcacgtttctta
ttcatgaagaataaggtccgaatgatctgtgattgtcgtgcaaaacacatacaggtgctt
caagatgagaaactcccatttgatttaacattatgtggttcaacactacgggctccacac
agttgccatgtacagtatatggagaacatgaattcaattgcttctcttgttatggcagtt
gttgtcaatgacggggatgaagagggtgaaagctctaattctgggcagccacagaagaga
aagaggctttggggtttagtggtttgccatcatacaactccaaggtttgttcccttccct
cttcgctatgcttgcgagtttctagctcaagtgtttgccatccatgtcaataaggagtta
gaattagaaagtcagattcttgagaagaatattctgcgtacacagacactcttgtgtgat
atgctgatgcgagatgcgcccttaggcatagtgtcacagagcccaaatgtaatggatctt
gtgaaatgtgatggagctgctctactatacaaaaataaagtatggagattgggaataact
ccaagtgacttccagttgcatgatatctgttcatggctatccgagtaccacatggattca
actggtttaagcacagatagcttgtatgatgcaggatacccaggggctcttgcccttggt
gatgcagtttgtgggatggcagctgtgaagataacttcaaaggatacccttttctggttc
cggtcccacacagctgcagaagttcgatggggtggggcaaagcatgaaccaggtgagaag
gatgatggtaggaagatgcacccaagatcatcatttaaagctttccttgaagtcgttaag
acgaggagtttaccttggaaggactatgaaatggatgcaatccattctttgcagcttatc
cttaggaatgctttcaaagattctgaggccatggatgtaaacaccaatgcgatccacaca
aagctcaatgacctaaaaattgaaggaatgcaagagctagaagcagtgaccagtgagatg
gtccgtttgattgaaacagccagtgtgccaatcttggcagttgatgttgatggtctggtt
aatggatggaatacaaaaatttctgagttgactagtctgcctgtagataaagcaattggg
atgcatttgctcacgcttgtggaagattcttcagctgatactgtaaaaaagatgttgcat
ttggcgttgcagggtcaagaggagcaaaatgtccaatttgagatcaaaactcatgggtct
aaaagagactctggccccatcagcttagttgtaaatgcttgtgcaagcagggatctcctt
gaaaatgttgtgggggtatgttttgtggcccaagatataaccagtcagaagacggtgatg
gataagttcacccgaattgaaggtgattacaaagcaatagtacagaacccaaacccattg
attcccccaatatttggcacagatgaatttggctggtgctctgagtggaatccggcaatg
gtaaagttatctgggtggaatcgggaagaagttatggataaaatgcttttaggggaagtg
tttgggacccatatggcatgctgtcgtctcaagaatcgagaggcttttgttggtttgggg
attgtgctcaatagtgttatgactggtcgggaatcagaaaaggtttcctttggtttcttt
tcaaagagtgggaagtatgtagaatgcctgctttctgtgagcaagaaattggacagagag
ggtgcagtcactggggtattttgcttcttgcagttagctagccaagagctgcaacaagca
cttcatatccagcggttgtcggagcaaactgccttgaagagattgaaagcattggcttat
ataaaaaggcagatcaagaatcctctttctgggattatcttttctcggaagatgatggag
gatactgatttgggagaggaacagcaacagattcttcatactagtgctcagtgccagcgt
caactcagcaagattcttgatgaccatgatcttgatagtattattgaaggttacttggat
ctggaaatggtcgagtttactctgcgtgaagtattggttgcctccatcagccaggtcatg
ataaagagtaatggaaagggtattcaaatagttaatgatgcggaagaggggatcatgact
gaaacactctatggagatggtcttaggcttcaacaggtgctagctgatttcttgttgata
tcagtaaattttacaccaggtggaggccagctttctgttgcagctagtttgatcaaagat
cggttgggggaatctgtccatcttgtgcatctggaactcaggataacacatgcaggaaat
ggggtaccagaacaattgctgaaccagatgtttggaaacaatggagacgcgtctgaggag
ggcataagtctgcttatcagcaggaaactggtgaagctgatgaatggggatgtccagtat
ctaagggaagcggggaaatcgactttcatcatatcaatcgaactagctgctgctagaaag
aagccacaggcctaa
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