Vitis riparia (riverbank grape): 117930335
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Entry
117930335 CDS
T07274
Name
(RefSeq) replication factor C subunit 3-like
KO
K10756
replication factor C subunit 3/5
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03030
DNA replication
vri03410
Base excision repair
vri03420
Nucleotide excision repair
vri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117930335
03410 Base excision repair
117930335
03420 Nucleotide excision repair
117930335
03430 Mismatch repair
117930335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vri03032
]
117930335
03036 Chromosome and associated proteins [BR:
vri03036
]
117930335
03400 DNA repair and recombination proteins [BR:
vri03400
]
117930335
DNA replication proteins [BR:
vri03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
117930335
DNA Replication Termination Factors
ELG1-RFC complex
117930335
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
117930335
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
117930335
Check point factors
HRAD17(Rad24)-RFC complex
117930335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RuvB_N
Rad17
RCF1-5-like_lid
nSTAND3
AAA
AAA_18
AAA_33
Motif
Other DBs
NCBI-GeneID:
117930335
NCBI-ProteinID:
XP_034706838
LinkDB
All DBs
Position
2:complement(10776326..10785800)
Genome browser
AA seq
541 aa
AA seq
DB search
MPKLDPYPFSSRSFSSESSMSGVPSMWCCKAARKTRNIYTDPHNRVQLGSITISDHRGRN
INPGIENHYTATTSASMGSTFLGFQKWSSCLQGEGGSCSSSTGNSMRTRELADMSITNET
KKKWKKNVDVNLMNDGAYPNKKPLSERASAAAQPMPIVLVCNAEKPKDDRKFNWADKYRP
KVLSDFICHQEIAEMLRLLVSIGVLSSHCIFEGPPGSGKRTMALALLRENFGTHVIETRE
EVKEFKVEGGPIPSIQINAQVSSKHIEVDLSELKSYAAHVVVELIKETHTLFSHDNTNNQ
AIVLYGAGMLSMNDQLQIQSCLETYKGHYKVYFCSSGASKLQHIESLCTVIQILPPSKEQ
IIKVLEFIAKSEGIELPPRLAENIAEKSKHSIQQAIRSFEATWQLNYPFKEDQMIPTDWE
EELAIIAKSIVDEQSPRQLYIVRAKLKKLMVHNVSPEIICKSLVEELNKLLDYQFQMIVT
NLRQNLIGVQSELEGERIEEPGKRNDVLFPRIVESIAKFVSVYKIISQQRGQQNAQIEYK
V
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagcttgatccttacccattctcctcgaggagtttttcctccgaatcaagcatg
tctggagttccttctatgtggtgttgcaaggcagcaaggaaaactcgaaacatctatact
gatccccacaacagagtacaattgggctccatcaccatatctgatcatagagggcgtaac
attaatccaggaatagaaaaccattatactgcaactacttcagcttctatggggtctact
ttccttggattccagaaatggagttcttgcctccaaggtgaaggaggttcatgtagttca
tcaactgggaattccatgagaactagagaattagcagatatgtccataacaaatgagaca
aaaaagaaatggaagaagaacgttgatgtcaatttgatgaatgatggggcctatccaaac
aagaagcccttgtcagagagagcatcagcagcagctcaaccgatgcctattgtgttggtt
tgtaacgcagaaaagcctaaggatgatcggaaattcaactgggcagataaatatcgaccc
aaagttttgagtgacttcatctgccatcaagaaatagctgaaatgctccgtcttttggta
agcattggagtactatcaagtcattgcatatttgaaggacctccagggtccggaaagaga
accatggccctggcattgcttagagaaaattttggaactcatgtaatagaaacaagggag
gaagttaaggaattcaaagtagagggaggaccaattccaagcatccaaataaatgcccaa
gtatcctcaaaacacatagaggttgatttatcagaacttaaaagctatgcagctcatgtg
gtcgtggaactgataaaagaaacacacacattattcagccatgataatacaaacaaccaa
gcaatagttctatatggggctggaatgctatctatgaatgatcaactccaaattcagagt
tgtttagagacttacaaaggccattacaaagtctacttttgctcttctggggcttccaag
cttcagcatattgaatccctttgcacagttattcaaattctgccaccatcgaaggagcag
attattaaagtgttggagttcattgcaaaaagcgaaggcattgaactacctcccagattg
gctgagaatatagcagagaagtctaagcatagcattcaacaagctattcgttcctttgag
gccacttggcaattgaactaccccttcaaagaggatcagatgattccgactgattgggaa
gaagaacttgcaattattgcaaaaagtatcgttgatgagcaaagcccaagacagttgtac
atcgtcagagcaaagcttaaaaaattgatggtccacaatgtatctcctgagatcatttgt
aagagtttagtggaagaattaaataagcttttggattaccaattccagatgatagtcact
aatttacggcagaacttgataggtgttcaaagtgaattagaaggtgaaagaattgaagaa
ccagggaaaaggaatgatgttctgtttccgaggatagtagaatctatagcgaagttcgtg
agcgtctacaagattatttcccaacaaagaggacagcagaatgctcaaattgagtataag
gtttaa
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