Vitis riparia (riverbank grape): 117930411
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Entry
117930411 CDS
T07274
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03013
Nucleocytoplasmic transport
vri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117930411
03015 mRNA surveillance pathway
117930411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117930411
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117930411
5.6.2.5 RNA 5'-3' helicase
117930411
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117930411
mRNA cycle factors
Common to processing body (P body) and stress granule
117930411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
UPF1_Zn_bind
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
UvrD-helicase
NPHP3_N
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
117930411
NCBI-ProteinID:
XP_034706952
LinkDB
All DBs
Position
2:12323605..12346692
Genome browser
AA seq
1106 aa
AA seq
DB search
MWQVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVN
ALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASL
EDLEKPGVDDEPQPIALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGL
NKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRAS
QGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNT
LPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVL
VCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK
LQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLID
ESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPI
RLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEE
ISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQ
LYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNP
KVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPN
DNFGTVTSSSPSADRRSSRGRGSYMPSGPPNGTHKPGVHPAGFPMPRVPLPPFHGGPPSQ
PYAIPTRGAVHGPVGAVPHVPPPGSRGFGAGRGNAGAPIGSHLPHQQGSQQAVGNLGSTF
NFPALENPNSQPSVGGPLSQPGFVTNMPVQGPSQTFRDGFSIGGMSQDFLGDDFKSQGSH
VPYNVADFSTQASQSGYTLDYATQGAQAGFPGSFLNQNSQAGYTRFGTGNDFMSQDYMAH
GSQGLFTQVGFNDPSQDDASQSHFGVANPNPLQSQGLMNPLYSQPFAHYNTQPLNLQAPQ
QQQQQQQQTPPQQGQSSQNQKLHYNG
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaagttcgagccaaacacaaggaagtttgtcttcataaagatagtcctcttgga
gaaacaatccttgaatgctacaactgtggatgccgaaatgtgtttcttcttggatttata
tctgccaagacagaaagtgttgttgttctgctttgtagagaaccttgcctgagtgttaat
gcattgaaggacatgaactgggacctaagtcagtggtgccctcttattgatgataggtgt
ttcttgcagtggcttgttaagatcccatccgaacaggagcaattgagggcacggcaaatc
agtgcccaacaaataaataaggtagaagaactttggaagacaaatcctgatgcttccctg
gaagatcttgagaagcctggtgtggatgatgaaccccagcccatagccttgaaatatgaa
gatgcatatcagtatcaaaatgtatttgcaccacttatcaagcttgaggcagactatgat
aaaatgatgaaagaatctcaaagcaaagacaacgtgacaattcgctgggatattggtctt
aacaagaagcgtattgcatatttcgtttttccaaaggaagacaatgagttgcgtcttgta
cctggtgatgagttgcggctgcgttattcaggagacgcagctcatccagcatggcagtcg
gttgggcatgtgatcaagctaactgcacaagaggaggttgcactcgagcttcgtgccagt
cagggagttcctgttgatgtgaatcatggtttcagtgttgactttgtgtggaagagtaca
agctttgataggatgcagggggccatgaaaacttttgcagtggatgaaactagtgtcagt
ggatacatttaccatcacttgttgggtcatgaagttgaggttcagatggttcgaaatacg
ctccctcgtcgatttggcgcaccaggccttccagagctcaatgcttctcaagtttttgct
gtaaagagtgtacttcaaaagccaataagtttgattcaaggtccacctggcactgggaaa
actgtaacttcagcagcaattgtatatcacatggctaaacaaggccaggggcaggttttg
gtttgtgctccaagtaatgtggctgtagaccaactagctgaaaagataagtgccactggg
ttaaaggttgttaggctctgtgcaaaatcgagggaagctgttagttctcctgttgagcat
ttaacccttcattatcaggttcgacatcttgatacgtcggaaaagagtgagcttcataag
ctacagcaactgaaggatgaacaaggggagttgtctagcagtgatgagaaaaaatacaaa
gctctgaagcgggcaaccgagagggagatatctcagagtgctgatgtcatttgttgcaca
tgtgttggtgctggggatcctcggttggccaattttagattccgtcaggtgcttattgat
gagtctactcaggctactgaacctgagtgcctcattcctttggttcttggtgtgaagcag
gttgtccttgttggtgaccattgccagcttggtccagtcatcatgtgtaagaaagctgca
cgggctgggctagctcagtctctgtttgagcgtcttgtgcttctgggtgtgaaaccaatt
agattgcaggttcaataccgtatgcacccatccctgtcagaatttccttccaatagcttc
tatgaaggtacactccaaaatggagtgaccatcaatgaaaggcaatcgtctggcattgat
tttccttggcctgtgccaaatcgacctatgttcttttatgtccagatgggacaagaggag
atcagtgctagcggaacatcctatctgaataggactgaagctgcaaatgttgaaaaaatt
gtaactacttttttaagaagtggtgtagttcccagtcagattggggtgataacaccatat
gagggacagagagcatatattgtgaattatatgtcaagaaatggtgctttaaggcaacaa
ctttacaaagaaattgaggttgcgagtgtagattcattccagggaagggaaaaagattac
attattttgtcttgtgtgaggagtaatgagcatcagggcattgggttccttaatgatcct
cgcaggcttaatgttgcactaacacgtgctcgttatggtattgtcatcctgggaaatcct
aaagttcttagtaaacagccgctatggaatagcttgttgacacactacaaggagcacgag
tgcttggttgaaggtcctctgaataacctgaagcagagtatggttcaatttcaaaagcca
aaaaagatctacaatgatcgtcgacttttcttcggaggtggccctgggatagtgcctaat
gacaattttggaactgttacttcgtcaagccccagtgctgatagaagaagcagtcgtggc
aggggttcatatatgccatctggcccacccaatggtactcataaacctggagtgcatcca
gctgggttcccaatgcctcgtgtcccccttcctccatttcatggtggtcccccatctcaa
ccctatgccattccaactcgtggagctgtacatggacctgttggagctgttcctcatgtc
cctccaccaggaagccgggggtttggtgctgggcgtggcaatgctggtgctcctattggc
agtcatcttccacaccagcaaggttctcagcaagctgttgggaatcttggctctactttt
aactttcctgctctggagaatccaaatagccagccatccgtgggtggtccattatctcaa
cccggatttgttactaatatgccagtacaaggtccgagccaaacatttcgtgatggattt
tctattgggggcatgtcgcaggatttcttgggtgatgattttaaaagccagggttcacat
gtaccttataatgttgcagacttctccacacaggcttctcaaagtgggtatacccttgat
tatgctacacaaggagcgcaggctgggtttccaggaagtttcctaaaccagaactctcaa
gctggatatactcgatttggtactggaaatgatttcatgtctcaggactacatggctcac
ggatcacaaggtctgtttacacaggttggcttcaatgacccatcccaagatgatgcctcc
cagagccattttggtgtggccaatcccaacccccttcaatcgcagggtttgatgaatcct
ctctactcccaaccctttgcccattacaacacacagccactaaatttgcaggctccacag
cagcagcagcaacagcaacagcaaacacctccccagcagggccagagctcccaaaaccag
aaactccactacaatggttga
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