Vitis riparia (riverbank grape): 117930958
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Entry
117930958 CDS
T07274
Name
(RefSeq) pre-mRNA-splicing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117930958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vri03041
]
117930958
Spliceosome [BR:
vri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117930958
Complex C
U4/U6.U5 tri-SnRNP related factors
117930958
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
117930958
NCBI-ProteinID:
XP_034707666
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Position
14:28458011..28462386
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AA seq
393 aa
AA seq
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MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
FGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNEEYKYVRILGAFYLRLTGIDTDVYQYL
EPLYNDYRKLRRRLSDGNYSLTHVDEVIDELLTKDYSCDVALPRIKKRWTLESLGTLEPR
RSALEDDFEEEEEKEEDDQLMDELDAGAHEKDYYRGRSPARERDRDRKRDSHRYRDRDYD
RERGRGRERDRERERDRDSYRDRERERDRDRDRYRLRDDKEYGRDREREREREGRERERR
DRDRGRRRSHSRSRSRSKDRKDREGGDHRKRHARSSTSPRRRGDMPEDGTTREEPRKKKE
KKEKKDDGTDHPDPEIAEANRLRASLGLKPLKL
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccgtacggacccagcggcgaagagcatacgaggcacgaatccgcaaaacttg
gtggagaagattctgaggtcgaagatttaccagaacacgtactggaaggagcagtgcttt
ggattgaccgcggagactctggttgacaaggccatggagctcgaccaccttggcggcacc
tttggtggtaaccgcaagcccacgcccttcatgtgcctcgtcatgaaaatgctccagatc
cagcccgagaaggacatcgttgtcgagttcataaaaaacgaagagtacaaatatgtccgt
atacttggtgcattttatttgcgtcttacagggatagatactgatgtgtaccaataccta
gagcctctatacaatgactatcggaaattgaggagaagattatctgatggaaattattct
ttgacacacgttgatgaggttatcgatgaacttctgacaaaagattattcctgtgacgtt
gccttgccccgtatcaagaaaagatggactcttgaatcccttggtacactggaaccaaga
agaagtgctttggaagatgattttgaggaagaggaagaaaaagaagaggatgaccaactc
atggatgaattagatgctggggctcatgaaaaggattattatcgtgggcgaagccctgca
agggagagagatagggatagaaagcgtgacagtcacagatatagagatcgagattatgat
agggaacgtggaagaggacgagaaagagatcgggaaagggaaagggacagagacagctat
agagacagggagagggagagggacagagacagggaccgctatcgtctgagagatgataaa
gaatatggtcgtgacagggagagggaaagggagagggaaggcagggagagggagaggcga
gacagggaccgtggcaggcggaggagccattcaaggagccgaagtaggagcaaggatcgt
aaggatcgcgagggtggagaccaccggaagaggcatgctcgcagcagcaccagtcctaga
aggcgtggagacatgccagaggatggaaccactcgagaagagccaaggaagaagaaagaa
aagaaggagaagaaggatgatggcactgaccacccagatccagagattgcagaagcaaac
aggttgcgggcatcccttgggcttaaacccttgaaactctaa
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