KEGG   Vitis riparia (riverbank grape): 117930982
Entry
117930982         CDS       T07274                                 
Name
(RefSeq) protein transport protein SEC13 homolog B
  KO
K14004  protein transport protein SEC13
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03013  Nucleocytoplasmic transport
vri04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    117930982
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    117930982
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vri03019]
    117930982
   04131 Membrane trafficking [BR:vri04131]
    117930982
Messenger RNA biogenesis [BR:vri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     117930982
Membrane trafficking [BR:vri04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    117930982
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    117930982
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    117930982
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_Vps41 Beta-prop_WDR3_2nd WDR55 Beta-prop_RIG_2nd ANAPC4_WD40 WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_TEP1_C EIF3I Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR41 NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_NOL10_N Beta-prop_HPS5 WD40_2 WD40_RFWD3 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 117930982
NCBI-ProteinID: XP_034707704
LinkDB
Position
14:1731106..1734117
AA seq 301 aa
MPSQKIETGHQDTVHDVAMDYYGKRVATASSDTTIKIIGVSNNASQHLATLSGHQGPVWQ
VVWAHPKFGSILASCSYDGRVIIWKEGNQNEWTQAHVFSDHKSSVNSIAWAPHELGLCLA
CGSSDGNISVFTARSDGTWDTTKIDQAHPVGVTSVSWAPSMAPGALVGSGLLDPVQKLVS
GGCDNTVKVWKLYNGNWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGTVVIW
TVAKEGDQWEGKVLKDFKTPVWRVSWSLTGNLLAVADGNNNVTLWKEAVDGEWQQVTTVD
P
NT seq 906 nt   +upstreamnt  +downstreamnt
atgccttcacagaagatcgaaacaggtcaccaggacacagtccatgatgttgccatggat
tactatggaaagagagtggcaacagcttcatctgataccaccattaagataatcggtgtt
agcaataatgcttcacaacaccttgctactttgagtggtcatcaaggccctgtttggcag
gttgtttgggcacaccccaagtttggatcaatccttgcttcttgttcctatgatggccga
gtgataatctggaaggaaggaaatcaaaatgagtggacacaagctcatgttttcagtgat
cataaatcatctgtcaactccattgcttgggcacctcatgaacttggcctctgcttggct
tgtgggtcctctgatgggaatatctctgtcttcactgctaggtctgatggcacttgggac
accacaaagatagatcaagctcaccctgttggagtaacctcagtttcatgggccccatca
atggctcctggtgctctggttggatctggtctgctggatcctgttcagaagctggtttct
ggtggctgtgataatactgtgaaggtgtggaagctatacaacgggaattggaagatggac
tgtttccctgctcttcagatgcatacagattgggtaagggatgtggcttgggcacccaat
ttggggcttccaaagtccacaattgcaagtgcttcacaggatggaacagttgtaatatgg
actgtggccaaggaaggtgatcaatgggagggtaaagttttgaaggatttcaagacccca
gtttggagggtctcatggtcgctgactggaaacctattggctgtggctgatggaaacaat
aatgtgacattatggaaagaagcagttgatggtgagtggcaacaggttactacagtggac
ccatag

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