Vitis riparia (riverbank grape): 117931114
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Entry
117931114 CDS
T07274
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117931114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117931114
03016 Transfer RNA biogenesis [BR:
vri03016
]
117931114
Enzymes [BR:
vri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
117931114
Messenger RNA biogenesis [BR:
vri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
117931114
Transfer RNA biogenesis [BR:
vri03016
]
Prokaryotic type
tRNA degradation factors
117931114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
Urease_gamma
KH_PNO1_2nd
KH-I_KHDC4-BBP
PCB_OB
Motif
Other DBs
NCBI-GeneID:
117931114
NCBI-ProteinID:
XP_034707879
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All DBs
Position
14:2843023..2864906
Genome browser
AA seq
997 aa
AA seq
DB search
MAAMASRRNPLLTSLPLYLTWRSLRYRTICSGHLGFASSSPSISEQIPVPGMKVLETFKE
EFEIGSRSITFETGKIARFANGAVVMSMDETKVLSTVASSKGDAARDFLPLTVDYQEKQF
AQGVIPTTFMRREGAPRERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDV
MAANATSAALMLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDLNLVYACTRDKTLM
IDVQAREISEKDLEAALRLAHPEAVRYLEPQIRLAARAGKSKKEYTLSMVSDITFEKVRN
LAEAPIEAVFTDHTYGKFERGEALDLITQDVKRALEEECDEESLKVLPKVVDTVRKEVVR
RRIIAEGLRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGAPGDAQRLD
SLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPEEEFPYTVR
INSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVGLVTEVDPSTNTIKDYRILT
DILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICECLEPALRGRLQILDRMEQ
EINAPRTQHYRNSPRLATLKFSNDSLRRLLGPMGALKRKIEEETGARISVSDGTLTVVAK
NQSVMDKVQEKVDFIVGREIEIGGIYKGVVTSVKEYGAFVEFNGGQQGLLHISELSHEPV
VRVSDVVSIGQQISLMCIGQDVRGNIKLSLKSTLPRPGSDTNNVVEGSIPITKQAPSVWA
SIGDVPDSEEKQNSDLEELPVAKDETSEGSLPTSKLPSFLIRSAAECDEEEKSAGFNQSS
RNTSKPRSISGSNDKLKTSPPQNGTSDSAKNVKKSKISSQKEKDINSIFTILSMGEDGDK
HGSAFNANSQNDLNDTKEVPETCTSAKNLKLGMKLNAKVYQIRTHGLVLDLGGGIRGMYR
FEGDNDKRDFKVGDELHVMCSSFSTKGIPVMSLVEDE
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggcagccatggcgagcagaagaaaccctctcctcacgtcgctgccactatacctcacg
tggagatccctccggtaccgtacaatttgcagtggccatctcggctttgcatcttcgtcg
ccgtccatttccgaacaaatccccgtccccggaatgaaagttctagaaactttcaaagag
gagtttgaaatcggatcgcgctcgatcactttcgaaaccggcaagatcgctcggttcgct
aatggcgctgttgttatgtccatggatgagaccaaagtcctctccaccgttgcttcatcc
aaaggcgacgcagctcgtgatttcttgccactcaccgttgactatcaagagaagcaattt
gcacaaggcgtgattccaaccacattcatgcggagggaaggtgctccaagagagagggaa
cttttatgtggccgtcttattgatcgaccaataagaccactgtttcctgctggcttttat
cacgaggttcaggtaatggcaagtgttctttcttctgatgggaaacaagatccagatgta
atggcagctaacgcaacatctgctgctctaatgttatcagatattccttggggcggcccc
attggagttatacgtatagggaggatttgcgggcagtttattgttaaccctagcatggat
gagcttagtttaagtgatctcaacttggtgtatgcctgcacaagggataaaactttgatg
atagatgtgcaagcccgtgagatttctgagaaagatctagaagctgcgctaaggctggct
caccctgaggcagttagatatcttgaaccacaaatcagattggcagctagggctggtaaa
agtaaaaaggaatatacgttgtctatggtgtcagatataacatttgagaaagtcaggaac
ttggcagaagcgcctattgaagctgttttcacggatcatacatatggcaagttcgaacgt
ggtgaagctttagatctaatcactcaagatgtaaaacgagccctcgaagaagaatgtgat
gaagaaagcttaaaagttctaccaaaagtggttgacacagtgaggaaagaggttgtccgc
agaaggattattgcagaaggacttagagttgatggaaggcatctcaatgaagttaggcct
ttgtattgtgaatctggcaatttacctatattgcatggatcatcactcttttcacgtgga
gatacacaggtcctttgtactgtgacacttggggcacctggtgatgctcaacgactggat
tctctggtcggtcctccaacaaagcgcttcatgcttcactatagtttccccccgttctca
attaatgaagttggtaaacgagttggcttgaacagacgtgaagttgggcatggcaccctt
gcagagaaagctctgcttgcagtgttgcctcctgaagaagagtttccttacacagtccgt
atcaattctgaggttatggcttctgatggttccacatcaatggcaactgtctgtggaggt
agcatggctttaatggatgctggcattccactaagggaacatgtagcaggcatttctgtg
ggtcttgttactgaagttgacccttcaactaacacaattaaggattatcgcatactaact
gatatattgggcctggaagatcatctgggggacatggattttaaaattgccggaacacga
aaaggaataactgctattcagttggatataaagcctgctggaattcctttagatattatt
tgtgaatgtttagagcctgcactcaggggtcgtcttcaaatccttgatcgcatggagcaa
gagataaatgcaccacgtactcaacattacaggaattcacctcgattagccacattgaag
ttcagcaatgattcacttcgccgcttgcttgggcctatgggtgctctaaagagaaaaatc
gaagaagaaacaggtgcacgaatctctgtcagtgatggaacacttactgtcgttgctaag
aatcaaagtgtgatggataaagtacaagaaaaggttgattttatagttggtcgtgagatt
gaaattggaggtatttacaaaggtgtggtaacttcagtaaaagaatatggtgcttttgtg
gagtttaatggtggccagcaaggcctccttcacatttctgagttatctcatgaaccggtc
gttcgcgtttcagatgtagtgtctattggccagcagatttcattaatgtgcatagggcag
gatgttcgtggtaacatcaaattatcactcaaatcaactttaccccgaccaggctctgac
acgaataatgtggttgaaggatccattcctattaccaaacaagcacctagtgtgtgggca
tcaattggggatgttcctgacagtgaagaaaagcagaactctgacctggaagagttgcca
gttgccaaagatgaaaccagtgaaggaagcctgcctacttctaaattaccatcatttcta
attcgaagtgctgctgagtgtgatgaggaggaaaaatctgctggcttcaatcagagttct
agaaatacctctaaaccccgaagcatttcgggttccaatgacaagttaaaaacatctcca
cctcaaaatggtacgtctgattcagctaaaaatgttaaaaagtcaaagatatcctcacaa
aaggagaaagatataaactccattttcactatcttaagtatgggtgaagatggggataaa
catggctctgcattcaatgcaaattctcaaaatgatttaaatgatactaaagaagtacct
gagacttgcactagtgcaaaaaacctgaagcttggaatgaagctcaatgccaaggtgtat
caaattcgtacccatgggctagtccttgatttgggtggtggaattcgaggaatgtatcgg
tttgagggtgataatgataagagggactttaaggttggtgatgagttgcatgtcatgtgt
tccagtttttctacaaaggggattccagtaatgtctttggtggaagatgagtag
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