Vitis riparia (riverbank grape): 117931382
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Entry
117931382 CDS
T07274
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117931382
09123 Folding, sorting and degradation
03018 RNA degradation
117931382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117931382
03041 Spliceosome [BR:
vri03041
]
117931382
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117931382
mRNA degradation factors
5'-3' decay
Lsm complex
117931382
Spliceosome [BR:
vri03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117931382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
117931382
NCBI-ProteinID:
XP_034708246
LinkDB
All DBs
Position
14:complement(28079464..28085417)
Genome browser
AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKNRADRKPPGVGRGRGRGREEGPGGRPAKGIGRGIDE
GAKGMGGGRGRGGPGGRSGGSRGGGRGRG
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttctctgctcaagactgctcaaggtcaccctatgttggtggagctgaaa
aatggggaaacttacaatggtcatttagtgaattgtgatacatggatgaacatccatctg
cgtgaagtcatctgcacttcaaaagatggagataggttttggagaatgccagaatgctac
attcgtgggaatacaattaagtatctcagagtccctgatgaggtgattgataaagttcag
gaagaaacaaaaaatcgtgcagatagaaagccaccaggagttgggcgtgggagaggaaga
ggtagagaggaaggtcctggtggaaggccagcaaagggcatagggcgtggcatagatgaa
ggtgccaaaggcatgggtggaggccggggcaggggagggcctggtggcaggagtggcggt
agcagaggtggaggacgtggccgtggctga
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