Vitis riparia (riverbank grape): 117931702
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Entry
117931702 CDS
T07274
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80-like isoform X1
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117931702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vri03400
]
117931702
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
117931702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_C
Ku_N
Motif
Other DBs
NCBI-GeneID:
117931702
NCBI-ProteinID:
XP_034708608
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All DBs
Position
15:complement(5694215..5704817)
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AA seq
688 aa
AA seq
DB search
MIRNQEALVLLLDVSPPMHNFLPEVEKLCFMLLQKKLIYNKKDLVGIVLFGTKVTKNELT
KKVGGYKHVLVSQDNKVVDGDLVEAVRELPRGTFAGEFLDAIVVGMDMLIKKFLLTKRGK
IKKRLCLITSALCPTKGPYKGAKEDEIGTIAEQMTAHGMRLECIVARGRLSGNMNMRIME
ENDLLLKLFSKKTIAKTVYVECPTSLLGALRTRNVAPVTIFRGDLELSPKMEIKVWVYKK
SAEELPVLKLYSDEAPPTDKFATHEVRVNLQYKSVEDPSKVVPLTQRIKGYSYGPQVVPI
SSAEWEAVKFEPEKGVKLLGFTDASNIMRHYYKKDVNIFIAEPGNTKAILAVSALARAMK
EMNKVAILRCVWRRKQRNAIIGILTPNVSEKDSVPDSFYFNILPYAEDVQEFQFPSFSNL
PLSWQPNEGQQEAADNLVQMLYLAPFGREESLLPDVTPNPVLERFYRYLELKSKKPYAAV
PPVDKTLKTITEPDPKLLAQNKSIIDEFKRRFELKQNPKLKKSTRDRQSGVKEEANIGES
SDAGAINSVENTSVITMVKKIGDSTPIQDFEAMMSHTESPEWVGKAIKEMKNKIFDLVQN
SNERDNHLKALDCLVAFRKGCILEQKPTEFSNFLLHIYKFCKYHNLNSFCESLASKEIML
IPKTEVTDSEVTEDEARSFMVKKEPILE
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgattcgaaatcaggaggcattggttttattgcttgatgtcagtccaccaatgcacaat
tttctgccagaagttgaaaaactctgcttcatgctattacagaagaagctgatctacaac
aaaaaagatttagttggaattgttttatttggaactaaagttactaaaaatgagctgacg
aagaaagtggggggatataagcatgtgctggtttcacaggataacaaagttgttgatggt
gatctggttgaagctgtacgagaacttcctcgagggacttttgctggtgagtttcttgat
gctattgttgttgggatggatatgttgataaagaaatttctattgacaaaaaggggaaag
ataaagaaacgtctttgccttattacaagtgcactatgtcctaccaagggtccatataaa
ggagcaaaagaagatgaaattggcaccattgctgaacaaatgactgcacatggcatgagg
ctggaatgtatagttgcaagggggaggctaagtggcaatatgaatatgagaataatggag
gagaatgatcttctattgaaactattttccaagaagacaattgcaaagacagtgtatgtt
gagtgtcctacttcattattaggcgcccttagaactcggaacgtagcacctgttacaata
ttcagaggtgatcttgaattaagccccaaaatggagatcaaggtatgggtttacaagaaa
tcagctgaagagctccctgtactgaaactatattcagatgaagctcctcctactgataaa
tttgccacacatgaagtcagggtaaatcttcagtataaaagtgttgaagatcctagcaaa
gttgtacctctgacgcaaaggattaaaggttatagttatggacctcaagttgttccaatt
tcatctgctgaatgggaagctgtcaaattcgaaccagaaaagggtgtgaagcttctagga
ttcactgatgcttcaaacataatgcgccactattacaagaaggatgtcaacatcttcatt
gctgagccaggaaatacaaaggctattcttgcagtttctgccttagcaagagcaatgaag
gaaatgaacaaggtagcaattttgcgctgtgtttggagacgaaaacagagaaatgctatc
atagggatcttgacacccaatgtatctgaaaaagatagtgttcctgattcgttttacttt
aatatacttccctatgctgaggatgttcaagaatttcagtttccatctttcagcaatctt
cctttgtcatggcagccaaatgaaggacagcaagaagcagcagataacttggtccagatg
ctttatcttgcaccatttggcagagaggaatctctcttacctgatgttacacccaatcct
gttctggagcgtttttatcgttatcttgagttgaagtcgaagaagccatatgcagctgtt
cctccagttgacaaaaccctcaaaacaataacggagcctgatccaaaactccttgctcaa
aacaagtccataattgatgaatttaaaaggcggtttgaactcaagcagaatcctaagctg
aagaaatcaactagagacagacagtctggtgtgaaagaggaagcaaatattggagagagt
agtgatgctggagccatcaattctgttgaaaatacatctgtaattactatggttaagaag
attggagattcaactcctattcaagattttgaagccatgatgtcacacacagaaagccca
gagtgggttggtaaagcaatcaaggagatgaagaacaagatttttgacctggtgcaaaat
tcaaatgaaagggataaccatcttaaagcattggattgtctagttgcctttcgcaagggt
tgcatccttgagcaaaaaccgacagagttcagcaatttcctcctccatatttacaaattc
tgcaagtaccataatctcaacagtttctgtgaatcccttgcatcaaaagaaatcatgctg
atccccaagactgaagtaacagacagtgaagttacagaagatgaggccagaagctttatg
gtgaaaaaggagcctatactagagtaa
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