Vitis riparia (riverbank grape): 117931872
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Entry
117931872 CDS
T07274
Name
(RefSeq) nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117931872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117931872
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117931872
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
ATG17_like
Motif
Other DBs
NCBI-GeneID:
117931872
NCBI-ProteinID:
XP_034708834
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Position
15:complement(7764359..7774407)
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AA seq
804 aa
AA seq
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MSGFNLPTSSAPPSSSSSSSTSLFPSFPSASASSSPLFSGISSSSSSSIFPFSNPSSSSS
PSPFSFGSTPSAASSLFPSVSPSTEFSLSSSPFQSSSTSSNPSSSSSSFSSQFSAFGSSS
SSSSPFGGVGSFASSAQGTFGFGFGSAPAASLAPSSGSTMFGASSISSTGSSLFGAASLS
STGSTLFGAPSVSSSPSPAFSTSAPFGSSSSSSAVISSTTTPSTANTLFGASSASASTAS
ALFGASSALVSTATANPLFGASSASVSTATASPLFGASSASVSAATPAFSSPLFGASSPA
PPFGPSSSSSTSASTAPSVPNFFSSNSSSPAPAFSFLKGTTSSTTTSVSSVSSLTSSTTS
SAGFSFGTPSSSDFQASFSLGNAASTTTSAAPASSASAATPAKPAPFGFGMSSPSLFSTV
TTTTSSSTPAAATTPAASAASTSAFAAFGVSSSASTVASPAFGVSSSSSTQATTPALPAF
GVGSSSSAIPSTIAAASTTSSSTAAGSFPGFGVTSAGASSGTTSSFPSFSLPTRLSAPAS
SSQAQTTTASPLFGVPPSTAVAVTSSSTTAVQTSSSLVVASSSGTTSTVTTAVAPALKMP
SEITGKTVEEIIKEWNTELQERTGKFRKQATAIAEWDKKILQNRDVLLRLEIEVAKVVET
QAQLERQLELIETHQQEVDKALLSIEEEAERIYKDERGLLLDDEAASTRDAMYEQAEFIE
REMEQMTEQIKSIIQTLNTNQGGELDVMDGMTPLDVIVRILNNQLSSLMWIDEKAQEFNS
RIQKLASQGSTSEHGSMGPKFWMS
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcttcaacctccccactagctctgcccctccttcttcttcatcatcatcatca
acctctttgtttccttcatttccttctgcttcagcttcttcatcgcctctcttctctgga
atttcttcctcttcttcttcctcaattttccccttctcaaacccttcttcttcgtcttct
ccatctccattctctttcggatcaaccccttctgctgcgtcctctctgttcccttctgtc
tcaccatccactgaattctcactgagttcttccccatttcaatcttcttccacttcttca
aaccctagctcctcctcttcttcattttcttcccaattctccgcctttggttcatcttcg
tcctcctcttcccctttcggtggggtaggatcattcgcttcttctgcccaaggtacgttc
gggttcgggttcggatccgctccagcggcatcattggcaccgagttctgggtcgaccatg
tttggggcgtcttcgatctcatccactggttcgtcactttttggggcggcttcgctctca
tccaccggttcgacattgttcggggccccttcggtctcatcgagtccttcccctgcattt
tctacttcagccccttttgggtcttcttcctcttcttcggctgtgatttcttctactaca
actccttccactgctaacaccttgtttggggcatcttcggcttcggcttctaccgctagt
gccttgtttggggcttcttcagctttggtgtctactgctactgctaatccattgtttggg
gcttcttcagcttcggtttctactgctactgctagtccattgtttggggcttcttcggct
tcggtttctgctgctacccctgccttttcgtctcccttgtttggggcttcttctcctgca
cctccctttggaccttcttcttcgtcttctacttcggcttcaactgctccttctgtcccc
aattttttttcttccaattcgagctctccagcacctgcattttcgtttttgaaggggact
acgagttctacgactacttctgtatcatccgtatcctctttgacatcctctaccacaagt
tctgcgggtttctcatttggaacaccatcctcttcggattttcaggcctcttttagtctc
ggaaatgcagcttctaccaccactagtgccgccccagcatcctcggcttctgctgcaaca
ccggcgaagcctgctccttttgggtttggaatgtcatcaccttcattattttcgacagtg
actactactactagttcttcgactccggccgccgccacaaccccagctgcttctgcagct
tccacctcggcgtttgctgcctttggggtgagttcttcagcttcaactgttgcttcacct
gcttttggtgtgagttcttcatcatcaactcaggcaacaactccagcattgcctgctttt
ggggtgggttcttcatcttcagctattccttcaaccatagcagcagcaagcacaactagt
tcctcgacagcggcagggtcttttcctggttttggtgttacaagcgcaggtgcttcctcg
gggactactagttcttttccgagtttttcgttgccgactagattatcagcccctgcttca
tcttcacaagcacaaaccacaactgcttctccactctttggtgttcctccttccactgct
gtagctgtaacaagttccagtactactgctgttcagacatcatcatccctggttgtagct
tctagtagtgggacaacctcaactgtcacaacagctgtagcacctgctctgaaaatgcca
tccgagatcactgggaaaactgtcgaagagatcatcaaggagtggaacactgagctacag
gaacgcactggaaaatttagaaaacaggctactgcaatagccgagtgggacaagaagatt
ttgcagaatcgtgatgttcttctgagacttgagattgaagtggcgaaagtggttgagacc
caagctcaattggagagacaacttgagttaattgagacccatcagcaagaggttgataag
gctttgctaagtatagaagaagaagctgagcgtatttacaaggatgagcgtggattgctc
cttgatgatgaggctgcatccacaagagatgcaatgtatgagcaggctgaatttatagag
agggaaatggaacaaatgacggaacagataaaatcaattattcaaacactaaataccaat
cagggtggagaacttgatgtgatggatgggatgactccattagatgtcattgtccgaatt
ttaaacaatcaactaagctctctaatgtggattgatgaaaaggctcaagaatttaactcg
cgcattcagaagcttgccagtcaaggttccacatcagagcatggatcaatgggtccaaaa
ttctggatgagttaa
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