Vitis riparia (riverbank grape): 117931979
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Entry
117931979 CDS
T07274
Name
(RefSeq) protein transport protein SEC16A homolog isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
vri04131
]
117931979
Membrane trafficking [BR:
vri04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
117931979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
FimL_2nd
Motif
Other DBs
NCBI-GeneID:
117931979
NCBI-ProteinID:
XP_034708930
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All DBs
Position
2:13921368..13930888
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AA seq
1422 aa
AA seq
DB search
MASSPPFAVEDQTDEDFFDKLVEDEFTVPKSSPGFADSDDSDEVKAFANLSIGEAGTGFE
DLGGEGGVEVKEEAGSMDAGAAHLGAHVEESGLASSNSFGFDSMVDWNNDLMGDKSMSDS
TVIKSSESEDLGVKEVQWSSFYADSAQNESNGFGSYSDFFSELGVGAGDFPGGVEENLNN
EARIASREGHRAYNAENSVNYVQYQDGQSHEGIMEQNTDGQDLNNSQYQENTYPGWRYDS
SSGQWYQVDGYDVTANVQQGTETNSVSDCAALDGKSEVSYLQQTSQSVLGTVTETGTTEN
VSNWNNLSQGNDKYPEHMVFDPQYPGWYYDTIAQEWRSLESYTSSGQSTIQAQGQQKENE
VVGTATESGLTESISNWDQVAQGNNGYPEHMIFDPQYPGWYYDTIAQEWRLLETYTSSVQ
STIQAQGQQNQNGVASTTQNSVSSTAQNGFFSTEAVVHNNDHSIYSSIMDQQKSLNFMGT
VPLFEKEKASQIHNDANGISSPQSFPTANLSQQYNQPKLEQSEYMHLSTDYYSNQKPVNY
AQQSFQSGNQFSYASNVGRSSAGRPPHALVTFGFGGKLIVMKDKSSLMDSSYVSQDPVKG
SISVLNLTEVVTENGDPTKGCNYFRTLCQQSFPGPLVGGSVGSKELNKWTDERITNCESP
DMDFRKGEVLRLLLSLLKIACQHYGKFRSPFGTDTIENDTPESAVAKLFASAKRNGAQFG
GYGALTQCLQQLPSEGQIRATASEVQSLLVSGRKKEALHCAQEGQLWGPALVLAAQLGDQ
FYVDTVKQMAIRQLVPGSPLRTLCLLIAGQPADVFSMDSTTDVGIPGALIKSEQSAQFGA
NSMLDDWEENLAVITANRTKDDELVLIHLGDCLWKERSEIIAAHICYLVAEANFESYSDS
ARLCLVGADHWKFPRTYASPEAIQRTELYEYSKVLGNSQFVLLPFQPYKLIYAHMLAEAG
KVSESLKYCQAVLKSLKTGRAPEVDMWRQLVASLEERIRTHQQGGYATNLAPAKLVGKLL
NFIDNTAHRVVGGLPPPSQSTVQGNEHDHPLMGPRVSSSQSTMAMSSLMPSASMEPISEW
TADGNRMTIPNRSVSEPDFGRTPRQADSSKEATSSNAQDNTSVSGRPSRFARFGFGSQLL
QKTVGLVLKSRTDRQAKLGETNKFYYDEKLKRWVEEGTEPPAEEAALPPPPTNTSFQNGM
PDYNLKNALKNEGSVSNGIPEFKSPPSSELSSGIPSIPSSSNQFSARGRMGVRSRYVDTF
NKGGGSPANLFQSPSVPSVKPTTGGANMKFFIPAMAPSGEQTLDATESMPEAAAADENPS
TSTLKDPINYQPLPPSSTTMQRFPSMDSIQNNGVMTNGNGSVSLQAQRPASWSGNFSDAF
SPPNMAEIKPLARASSMSPSSSLMHLPMNGGSFGDDLHEVEL
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgagtcctccattcgcggtggaggatcagaccgacgaagacttctttgataaa
ttggtggaggatgagttcacggtaccaaaatcgagcccagggttcgctgacagtgatgat
tctgacgaggtaaaggcctttgcgaatctgagtattggtgaggctgggactgggtttgag
gatttgggtggggaaggtggggttgaggtgaaggaggaagccggtagtatggatgctggt
gcagctcatttaggtgctcatgtagaggagagtggcttggcatcatctaattcgtttggg
tttgatagtatggttgattggaataatgatcttatgggagataaaagtatgtcagactcc
acagtgattaagagtagtgaatctgaggatttgggggttaaggaagtgcagtggagttca
ttttatgctgattcggcacagaatgagagtaatgggtttggatcatattcagatttcttt
tctgagttgggggtcggtgctggagattttcctgggggagtggaggagaatttgaataat
gaagcaaggattgcatctcgtgaaggacatagagcttataatgctgaaaattcggttaac
tatgtacaatatcaagatggtcaatcccatgaagggatcatggaacaaaacactgatggg
caagatctgaataatagtcagtatcaggaaaacacctatccagggtggaggtatgactca
agttctggacaatggtatcaagtggatggttatgatgtgaccgccaatgttcaacagggc
actgagaccaattcagttagtgattgtgctgctttggatgggaaatcggaggtctcttat
ttacagcaaacttctcagtctgttctgggaactgtaactgagactgggaccactgagaac
gtttctaattggaacaatctctcacaagggaatgacaagtacccagaacatatggttttt
gatcctcaatacccaggttggtattatgacacaattgcccaagaatggcgctcactggag
tcatatacttcatctggtcagtctaccattcaagctcagggtcagcagaaggaaaatgag
gttgtgggaactgcaactgagagtggattgactgagagcatttctaattgggatcaggtt
gcacaagggaataatgggtatccggaacatatgatttttgatcctcaataccctggttgg
tattatgacacaattgcccaagaatggcgcttactggagacatatacttcatctgttcag
tcaactattcaagctcagggtcagcaaaatcaaaatggggtggcttctactactcaaaat
agtgtttcttcaactgctcaaaatggatttttttcaaccgaagctgttgttcacaacaat
gatcatagtatatacagttcaatcatggatcaacagaagtctcttaattttatggggact
gttcctttatttgagaaagagaaagcaagtcagattcataatgatgccaatgggatttct
tcaccgcaaagctttcccactgctaacttaagtcagcagtataatcagccaaaattggag
cagagcgaatatatgcatttgtcaactgattactacagcaatcagaaacctgtaaattat
gctcagcaatcatttcagagtggcaatcagttttcttatgcttccaatgtgggtagatct
tctgcaggccgccctccgcatgcgctggttacttttggatttggtggaaaactcatagta
atgaaagataagagttccctcatggactcatcatatgtaagccaggatcctgtgaagggc
tcaatctctgttctcaacctgacggaagttgtcacagaaaatggtgatccaacaaagggc
tgtaattattttcgtactctatgccaacaatcctttcctggtccattggttggtgggagt
gttggaagtaaagagttgaataaatggactgatgagaggatcacaaactgtgaatctcct
gatatggattttaggaagggtgaagttttgaggttgcttctctccctgctcaaaatagct
tgtcagcactatggaaaattccgatctccttttggcactgacaccatagaaaatgatact
ccagaatcagcagtagctaaactctttgcatctgccaagaggaatggagcacaattcggt
ggctatggtgctcttacccagtgcttgcagcagctgccttctgaaggacagattcgagca
actgcttctgaagtacagagtcttctggtttctggtagaaagaaagaggctctacattgt
gcacaagaagggcagttgtggggacctgcccttgttcttgctgcacaactcggtgatcag
ttttatgttgatactgttaagcaaatggcaattcgccagctagtaccaggatcacctttg
cggacactatgtctgctaattgctggacaaccggctgatgtgttttccatggacagcaca
actgatgttggcatccctggagctttaattaagtctgagcagtctgcacagtttggggct
aatagtatgctagacgattgggaagagaatttggctgtgataactgccaatagaacaaaa
gatgatgaacttgtacttattcatcttggagattgcttatggaaggaaagaagtgagatt
attgctgcacacatctgctacttagtagcagaagccaattttgagtcatattcagatagc
gcaagactgtgtcttgttggtgcagatcactggaaattccctcgaacatatgctagtcca
gaggctattcagaggaccgagttgtatgaatactcaaaggtgcttggaaactctcagttt
gttctgctaccatttcagccatataagcttatatatgcacacatgttggctgaagcaggg
aaagtttcggaatcgttgaagtactgtcaagcagtattaaagtccctgaaaaccggacgt
gcacctgaagtggacatgtggaggcaattagtagcttctcttgaggagaggataagaacc
caccaacagggtgggtatgctacaaacctggctccagcaaaattagtgggtaagttgctc
aactttattgataacaccgcacatcgtgtggttggaggcttaccaccaccatcccagagc
actgttcaaggtaatgaacatgatcatccactgatggggcctagagtttcaagtagtcaa
tcaacaatggcaatgtcatcattgatgccttcagcatcaatggagcccataagtgaatgg
acagctgatggcaatagaatgaccatacctaatagaagtgtttcagagccagactttggt
cgaactccaagacaggctgattcttcaaaggaagcaacgtcatccaatgcacaagacaac
acatcagtttcagggaggccttctcgctttgcacgttttggttttggctcacagcttttg
cagaagactgtgggcctagtcttaaaatcccgcacagaccgccaggccaaactgggtgaa
acaaataaattttattacgatgaaaaacttaagagatgggtagaggaagggactgaaccc
ccagctgaagaagcagcactaccacccccaccaacaaatacatcctttcaaaatggcatg
ccagattacaacttgaaaaatgcattgaagaatgagggttctgtcagcaatggaatccct
gaatttaaaagcccaccttcttcagagcttagttcagggatcccatctattccatccagc
tcaaatcaattctcagctcgtggacgaatgggtgttcgttcaaggtatgttgacaccttc
aacaaaggtggtgggagcccagccaacttattccagtctccttctgttccatctgttaaa
cccaccactggtggtgccaatatgaaattttttattccggccatggcaccctcaggtgag
cagacattagatgcaacagaaagcatgcctgaagctgctgctgctgatgaaaatccttca
acatccactttgaaggacccaattaattatcaacctttacctccatcatcaacgaccatg
caaaggttcccaagcatggatagcatccagaataatggggtgatgacaaatggcaatggc
tcagtttcattgcaggcacagcggccagcatcatggagtggaaactttagtgatgcattc
agtcctccaaatatggctgaaataaaacctctagccagggcatcgagcatgtcgccgtca
tcgtctctgatgcatttgccaatgaatggtggcagttttggagatgatcttcatgaagtg
gaactttga
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