Vitis riparia (riverbank grape): 117932277
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Entry
117932277 CDS
T07274
Name
(RefSeq) protein transport protein SEC16B homolog
KO
K20353
COPII coat assembly protein SEC16
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
vri04131
]
117932277
Membrane trafficking [BR:
vri04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
117932277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
FimL_2nd
Kelch_1
Motif
Other DBs
NCBI-GeneID:
117932277
NCBI-ProteinID:
XP_034709340
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All DBs
Position
15:complement(7041930..7050274)
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AA seq
1400 aa
AA seq
DB search
MASPPLQVEDQTDEDFFNQLVDDEIDSTRSGPGIVEGDDADEAKVFRNPSISEVGTAGVS
AGNVESGVNGEQGNGDGAVSTLSDSGEDALVTSSKFVTPGTVIESGDEAVGEESLPSTSI
GENSGSSGRGVKVVQWSSFNSDSHLQGGIMSYSDFFNELGDRTRDPFDNAVNQESSGAEF
NNMSSVSGNPVEDLSSLNSTQHQECQNYGVAREQAVDGQDLNSSQHWEELYPGWRYDPST
GEWHQLEGYDANASMNAQIAGDGIVSNQRSDAHYLQQTTQSLSIMGSVAEECTGGSVPNW
NQISQGNVEYPAHMVFDPQYPGWYYDTIALEWRLLESYNPSVNHSMTVNNNQQNQTGSVL
SGNFFTNNSHTIHEQVENYGLKGLSGQSQVANWDGSASDYCQQQKNIWQPETVSESDAIG
FTAKQQMQNLYGSQFHVNNFSNQQTGSKSLGIGASYEQTSHGFDGTNEVSGFQSFTPGEN
LSRHHNQTNMDLSQQMQFSPAYFDGQKSVNLPQQPHQSDTQFSYAPKERWSSAGRPPHPL
VTFGFGGKVLVMKDNGSFLTNSSYGHQDSAGGVVNVLNLMDVVVGKNDSLCTGTGGRDYF
HILSHQSFPGPLVGGNVGSRELNKWVDEKIAKCESSNMEYRKGEVLRLLFSLLKIACQYY
GKLRSPFGTDQALKESDSPESAVAKLFSYAKRSGVQLSEYGTLTRCLQNLPSEAQIQATA
LEVQKLLVSGRKKEALGCAIEGQLWGPALVLAAQLGDQFYGDTVKQMALQQLVAGSPLRT
LCLLIAGQPADVFSNTATISQQSGQIWAGANSMLDEWEENLAIITANRTKDDELVIIHLG
DCLWKERGEIAAAHICYLVAEANFESYSDSARLCLIGADHWKFPRTYASPEAIQRTEFYE
YSKVLGNSQFILLPFQPYKIIYAHMLAEVGKVSDSLKYCQAILKSLKTGRVPEVETWKLL
VSSLDERIRTHQQGGYSTNLAPTKLVGKLLTLFDSTAHRVVGGLPPPVPSASHGNVRRSE
QVNQPGGPRVSNSQSTMAMSSLMPSASMEPISDWMGEGNRLTKPNRSISEPDFGRTPRKV
DSSKEASPDIKASSSGAPSRFGRFGSQIFQKTVGLVLRSRSDRQAKLGEKNKFYYDEKLK
RWVEEGTELPSEEAALPPPPPTAVFQNGMPDSSMKDAAKVENSESNGGPEIKSPNSSERG
SGIPPIPPSSNQFSARGRMGVRSRYVDTFNKGGGTATNLFQSPSLPSPKPGIVSNPKFFI
PTPIASGEETIQTTRESIQEATGTNENLSRSVKNDGFAPPPTSTSSSMAMQRHPSMNDIL
YNSMGTTAKSNPSVIPHSRRTASWSGTFSDSISQSIRTDVKPLGEVLGMNPSQYLPSNSS
PMRFSVSGNSIGDDLHEVEL
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctcctccattgcaggtggaggatcagacggatgaggattttttcaatcaattg
gttgatgatgagattgattctactcgatctggccctggtattgtagaaggtgatgatgcg
gatgaggccaaagtgtttaggaatccaagtattagtgaagtcggtaccgcgggagtctcg
gctggaaacgttgagtctggggtcaatggggaacagggtaatggagatggcgccgtgtcc
acattatcggatagtggggaggacgctttggttacgtcatcaaaatttgtgacacccggt
actgtgattgaatctggtgatgaagcagtgggggaagaaagtttaccgagtactagcatt
ggtgagaatagcgggtcttcgggaagaggtgttaaagtggtacaatggagttcgttcaac
tcagattctcatcttcagggtggcatcatgtcgtattcagatttttttaatgaattgggg
gatcgtacaagagatccatttgataatgcagtaaaccaagagagttctggggctgaattc
aataacatgagcagtgtttcaggaaacccagttgaggatttgagttccttgaattccaca
caacatcaagaatgccaaaactatggggtggctagggagcaggcagtagatgggcaggat
ttgaatagtagtcagcactgggaagagctctatccagggtggaggtatgatccaagcact
ggagaatggcatcagttagaaggttatgatgcaaatgctagtatgaatgctcagatagca
ggtgatgggattgtttcaaaccagagatcagatgctcactatttgcagcaaaccacacag
tctctttccatcatgggaagtgtggctgaagaatgtacaggtggtagtgtacctaattgg
aatcagatttcacaaggtaatgtggaatacccagcacacatggtgtttgatccacagtat
cctggttggtactatgacacaattgccctagaatggaggttgttagagtcttataatcca
tctgtaaatcactcaatgactgtcaataataaccagcaaaatcaaactggaagtgttttg
tcaggtaatttcttcaccaacaatagtcataccatccatgagcaagttgaaaattatgga
ttgaaaggcctcagtggtcaaagccaagttgcaaattgggatggatctgcgagtgattac
tgtcagcaacagaagaatatttggcaacctgagacagtttctgagagtgatgcaattggt
tttactgcaaaacagcaaatgcagaatctctatggttcacaatttcatgtgaacaatttt
tctaatcaacaaacaggttcaaaatccttggggataggtgcttcatacgaacaaacaagt
catggttttgatggcactaatgaggtttcagggtttcaaagctttactcctggtgaaaac
ctttctcgacatcataatcagacgaatatggatctaagccaacagatgcaattttctcct
gcttactttgatggacaaaaatcagtaaatttaccacagcagccacatcagagtgacaca
cagttctcttatgctcccaaagagcgttggtcatctgctggacgacctccacatccattg
gttacttttgggtttggtggaaaagtcctagttatgaaagataacggttcttttctaaca
aactcttcatatggacaccaggactcagcaggaggtgtggttaatgttctcaacttgatg
gatgttgttgtgggcaaaaatgattctttgtgcactggaactggtggtcgtgattatttc
catatattatcgcatcaatcttttcctggaccgctggtcggagggaatgttggaagcaga
gagttgaataaatgggttgatgagaagattgcaaaatgtgaatcttcaaacatggagtat
agaaaaggcgaggtcctgaggttgcttttctctttgctgaaaatagcatgccagtattat
gggaaactccgttctccctttggcactgaccaagcattgaaggaaagtgattctcctgaa
tctgctgtagctaagctcttttcatatgctaaaagaagtggtgtgcaacttagtgagtat
ggcactcttacacgatgcttgcagaacttgccttccgaagcacagattcaggctactgct
cttgaagtacagaagcttcttgtctctggtagaaaaaaggaggctttaggatgtgcaata
gaaggtcaattatggggacctgcacttgttctggctgctcaacttggtgatcagttttat
ggtgataccgtgaagcaaatggcacttcagcagttagttgcaggatcacctttgcggacg
ttgtgcctgttaattgcagggcagcctgcagatgtcttttccaatactgcaactatatct
caacagtctggccagatatgggctggggcaaacagtatgctagatgaatgggaagagaat
ttggccataataactgctaacagaacaaaagatgatgagcttgttattattcatcttggt
gattgcctatggaaggagaggggtgagattgctgctgcccacatctgttacttagttgct
gaagcaaactttgagtcatattcagacagtgcaagactatgtcttattggtgcagatcat
tggaaattcccccgaacatatgctagtccagaggctattcagaggacagaattctatgaa
tattcaaaggtgcttggcaattctcagtttatcctactaccttttcagccttataagatt
atttatgcccacatgctggctgaagtgggaaaagtttcagattctttgaagtactgtcag
gcaattttgaaatctctaaaaactggacgagtacctgaagtggaaacatggaaactgtta
gtatcatctcttgatgagcggataagaacccatcagcagggtggttactcaactaatttg
gctccaacaaaactggtgggtaaattgctgactttatttgatagtactgctcatcgtgtt
gttggaggtcttccccctcctgtaccatcagcatcacatggcaatgttcgacgtagtgaa
caagttaaccagcctggaggcccaagggtatcgaacagtcaatcgacgatggcgatgtct
tcattaatgccttcggcatcaatggaacctataagtgactggatgggtgagggcaatcga
ctgacaaagcctaatagaagcatttcggagccagactttggaagaactccaagaaaggtt
gattcatccaaggaagcctctcctgatataaaagcatccagttcgggggcaccttctcgt
tttggccgttttggctcacaaatattccaaaagactgtggggttggtcttaagatcccgc
tctgaccggcaggcaaaactaggtgagaagaataaattttattatgatgaaaagctcaag
cgatgggttgaggaaggtactgaacttccatctgaagaagcagccttgccgcccccacca
ccaactgcagttttccagaacggaatgccagatagcagcatgaaagatgcagccaaagtt
gaaaactcagagagtaatggtgggccagaaatcaaaagcccaaattcttctgaacggggt
tctgggatcccacctatcccaccctcttcaaatcagttctctgctcgtgggcgcatgggt
gttcgctcaaggtatgttgacacattcaacaagggtggtgggacagcaacaaacttgttc
cagtcaccttcacttccatccccaaaacctggaattgtttccaaccccaagtttttcatc
cccactccaatagcctcaggagaagaaacaatacaaaccactagagaaagcattcaagaa
gccacaggaaccaatgaaaatctttctagatctgttaaaaacgatggatttgcacctcca
ccaacatcaacatcatcatcaatggctatgcaacggcatcctagcatgaatgacatctta
tacaacagtatgggaaccacggcaaaatccaacccctctgttattcctcactcccgccga
acagcatcatggagtgggacctttagtgattctataagtcagtctataaggactgatgta
aaaccgctaggagaagtacttggtatgaatccgtcacaatatctgcccagtaactcttcg
ccaatgcggttttcagtgagtggcaatagtattggggatgatctgcatgaagttgaactt
tga
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