Vitis riparia (riverbank grape): 117932458
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Entry
117932458 CDS
T07274
Name
(RefSeq) decapping nuclease DXO homolog, chloroplastic isoform X1
KO
K14845
RAT1-interacting protein
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117932458
03009 Ribosome biogenesis [BR:
vri03009
]
117932458
Transcription machinery [BR:
vri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117932458
Ribosome biogenesis [BR:
vri03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
117932458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAI1
Motif
Other DBs
NCBI-GeneID:
117932458
NCBI-ProteinID:
XP_034709606
LinkDB
All DBs
Position
2:complement(12917309..12929559)
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AA seq
502 aa
AA seq
DB search
MDFSEQDVDNFGGDGARQSSSSSSSSSSSSRSSSNGSDGGETSSAGSGSGSASASGSSSE
GEDNGEEVDKRTHGYEERDLFGSDSDEKDLFGSDNEDYCKTLAISPYPVPVLPTIRNNNN
QNRGGFGRGRWQNDRGAGILPRPGPYPQRHNYGYGSKFNNRHDERFVSELKLSKSEETLS
RKCIAFQEPCELACYSRVEGGDVCFDDRSLRLFKRLITEDVGADLNEGYDTFIEKKDLGS
EGFGDLLAAIRNRNIPLGNIHFVTFRNNLNKILATAYIRHEAWEMGVHKRNGVVYLDVHK
LPERPQSDLDRRRCYWGYCFESLATEDPRRADGEGIHHIDANAEYCSVIKTKLGAHRILM
GAEMDCCDSTDDGRRFYVELKTSRELDYHTEERYEREKLLKFWIQSFLAGVPYIVIGFRD
DGGRLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAPPF
TRLELLQAQSCPDAISNHVQQL
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggatttctcggagcaagacgtggacaacttcggaggagatggagcccgccaatcgtca
tcatcgtcgtcgtcgtcttcctcttcatcaagatcttcgtccaacggcagcgacggcggc
gagaccagcagcgccggcagtggcagcggcagcgcaagcgcaagcggaagcagcagcgaa
ggagaagataacggcgaagaagtggacaagaggactcatgggtacgaggagagagatctc
tttggctctgatagtgatgagaaggatctgtttggctctgataatgaagattactgcaaa
accctagctattagcccttatccggttccagttttgcccaccattcgtaataataacaac
caaaatagaggcggttttgggcgtggtagatggcaaaatgatagaggagcgggaattctt
cctcgacctggaccttatcctcagaggcataactatggttatggctctaagtttaataac
cgacatgatgaacgttttgtttctgaactaaagctttcaaagagtgaagaaacattgtca
agaaaatgcattgcatttcaagagccatgtgaacttgcttgctatagtcgtgtagaaggt
ggagatgtctgctttgatgaccgcagcttacgactttttaagcgtcttattactgaagat
gttggagctgatctcaatgaaggttatgatacttttatcgagaaaaaagatttgggttct
gagggttttggtgaccttctggctgctatcagaaacagaaacatcccacttggaaatatt
cattttgtgactttccgtaacaacctgaataagatactggctactgcttatatcaggcat
gaggcatgggaaatgggggtgcataaaaggaatggagttgtgtatcttgatgtgcataaa
ctaccagaaagaccacaaagtgacttggatcgtcggagatgttattggggatactgtttt
gagagccttgccactgaagatccaagaagagctgatggagaagggatacaccatattgat
gcgaatgccgaatattgttctgtgattaagaccaaattaggggctcatcggattttgatg
ggtgctgaaatggattgctgtgattcaactgatgatggaagaaggttctatgtggagtta
aagacaagtcgtgagctggactatcatactgaggaaagatatgagagggagaaactgcta
aaattttggatccagtcattcttagcaggtgtaccctatattgtcattggatttagggat
gatgggggtcgacttgtccgcacggagagactaagaaccaaagacataacacaaagagta
aaaatgaagaactactggcagggaggagtttgccttgcatttgctgacgaggtgttatgc
tggctctatggaacagtcaaagagaatgaagactacatattgcagtttgctccgcctttc
acccgattagagcttctacaggcccaatcatgcccagatgcaattagcaaccatgtccag
caattgtag
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