KEGG   Vitis riparia (riverbank grape): 117932679
Entry
117932679         CDS       T07274                                 
Name
(RefSeq) lysine-specific demethylase 5B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
vri  Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:vri00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:vri01009]
    117932679
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:vri03036]
    117932679
Enzymes [BR:vri01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     117932679
Protein phosphatases and associated proteins [BR:vri01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     117932679
Chromosome and associated proteins [BR:vri03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    117932679
SSDB
Motif
Pfam: PLU-1 JmjC JmjN PHD zf-C5HC2 ARID KDM5_C-hel PHDvar_NSD Pfc11_Rna14-15-ID BT_3657-like_N
Other DBs
NCBI-GeneID: 117932679
NCBI-ProteinID: XP_034709848
LinkDB
Position
2:complement(16724636..16770255)
AA seq 1855 aa
MGKGRPRAVEKGVLGQSSSVSLSGSLSIPPGPVYYPSEDEFKDPLEYIYRIRPEAEPYGI
CRIVPPKSWKPPFGLDLDSFTFPTKTQAIHQLQARPAACDSKTFDLEYNRFLDNHCGKKS
KKRVVFEGEELDLCRLFNAAKRFGGYDKVVKEKKWGEVCRFVLSGRKVSECAKHVLCQLY
REHLYDYEDYYNRLNHGVVRSCKRGMHGEKKGEHGVESLSSKRRRRNTDGEKVKVCKVEE
KEEEFDQICEQCESGLHGEVMLLCDRCNKGWHIYCLAPPLKRIPPGNWYCLDCLNSDKDS
FGFVPGKRFSLEAFRRVADRAKRKWFGSVSPSRMQIEKKFWEIVEGLVGEVEVKYGSDLD
TSVYGSGFPRVNDKKPESVEDEIWDKYCASPWNLNNLPKLQGSMLRAVHHNIAGVMVPWL
YVGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSEAIAFEKVMRNCLPDLFDAQPD
LLFQLVTMLNPSVLQENGVSVYSVLQEPGNFVITFPRSYHGGFNFGLNCAEAVNFAPADW
LPHGGFGAELYQLYRKAAVLSHEELLCVVAKANDCDSKALPYLKKELHRIYAKEKNCREG
LWSNGIIKSSPMSPKKCPEFVGTEEDPTCIICQQYLFLSAVVCCCRPSAFVCLEHCKHLC
ECKPNKHRLLYRHTLAELKQLVLLIDKYNFDETPQCRDLQRQLSCSDDSNALTKKVKGGH
VSLAKLAEEWILRSSKIFQIPFSRDAYVNALKETEQFLWAGSEMDAVRAVAKNLIEAQNW
AEGIKDCLYKIESWSCNRSHNLEKVDLEHVNNFLNLNPLPCIEPGHLKLKGYAEEAMILV
QEIDSALSTSSKSSIPELEQLYSRACEVPIYVKEMEKLMARISALKVWVDNVKKCILEKC
PAAIEVDVLYRLKSEMLELQVQLPEVEMLMDLLRQVESCQARCNEILNGPINLKQNVEVL
LQELESITVNIPELKLLRQYHGDAVSWISHFNDVHVNIHEREDQENVVDELQCILKQGLL
LRIQVDELPLVEVELKKAYCRKEALKVFNARRTKMTLFSIQQLMEEAAMLRIEGEQLFVD
VSGVLAAAMHWEERAAHIFATEAQMSDFEDVIRTSKDIHVILPSLDDVKDAISMAKSWLK
NSKPFLGSSFPAAHPSCSLLKVEALKELVSQSKLLKISLEERTMIHSVLKNCLEWEHDSC
SLLEEVDCLFNTNNIDNALINGLIPKIEHLVTMIESILETGLSLGFDFDEIPKLQNARSI
LQWCNKALSFCSVAPALPGIESLMENAEHLPVTCASSALCSSLIDGVKWLKKASEVIPVS
CNGKICKLSDAEEVLSEVQRIKVSFPLMVGQLLKAIEKHKLWKEQILIFFGLKTEERSWS
KLLQLKELGKDDAFSCCELDMVLSETEKVEKWKLHCMDIVGHPVGDVNSLLDALVKIKHT
LDRSLYIYKKARGCNPRDPCIHCFSDIKDQELLTCSICKDCYHLQCLGATLGHQSDAKAY
VCSYCQFIGSGSISRNGGALRFGGKRPELNMLIELLSDAEGLCVGIEERDVVQQLVELAI
ACKDCLTELTDFTLAYLNRDLSIISEKLTTALKAVEMAGVYYNHGNNRLELALARNSWRV
RVNKLLEDSQKPLIQHIQKFLKEGLAISIPPEDHFWQKLTELKCIGLQWAENAKKVSMDS
GALGLDEVCELITQGENLPVHFEKELKLLRARSMLYCICRKPYDQRAMIACDQCDEWYHF
DCIKLSSEPKIYICPACKPHTGELSVLLSVNKERSTGAKYGEPQTPSPPHTESRRKNIEA
KPSLKQMMPAAMDHGNILRYSDGIDCLFWRNRKPFRRVAKRRAEVESLSPFFHIQ
NT seq 5568 nt   +upstreamnt  +downstreamnt
atggggaaggggagacctagggcagtggagaaaggggtgttagggcaaagttcaagtgtt
tcattatcagggtcactgagtataccacctgggcccgtgtattaccccagtgaggacgag
tttaaggaccctttggagtatatatacaggatcaggccagaggctgagccatatggaatc
tgtaggattgttccacccaagagttggaagccaccttttggattagatttggattctttc
acttttccaactaaaactcaagctattcatcagttacaagcacggccggcggcctgcgat
tcaaagacatttgatttggagtataataggtttttggacaatcattgtgggaagaagtcg
aagaagagggtggtttttgagggggaggagttggatttgtgtagattatttaatgcggca
aagcggtttggtggttatgataaggttgtgaaagagaagaagtggggggaggtttgtagg
tttgtgctgtcagggaggaaggtttcagagtgtgcgaagcatgttctgtgtcagttgtat
agggagcatttatatgattatgaggactattacaatcgattgaatcatggggtagttagg
agttgtaagagaggaatgcatggggagaagaagggcgaacatggggtcgagtctttgagt
tccaaaagaaggcggagaaatactgatggtgagaaagttaaagtttgtaaggtagaagag
aaggaggaagagtttgatcagatatgtgaacaatgtgaaagtggcttgcatggggaagtg
atgcttttgtgtgataggtgtaataagggatggcacatttattgtctagcacccccttta
aagcggattcccccagggaattggtattgcttggactgcttgaattctgataaggatagc
tttggttttgtgccgggtaaacgtttctcattggaagctttcaggcgtgtggctgataga
gcaaagaggaagtggtttgggtctgtatccccctcaagaatgcaaatagagaaaaagttt
tgggaaattgtggagggattagtgggtgaggttgaagtcaagtatggcagtgacttggat
acttctgtatatgggagtggttttcctcgtgtaaatgacaagaaaccagaatccgttgag
gatgagatttgggataaatactgtgctagcccatggaatctcaacaatttgcccaagttg
cagggttcgatgcttcgagctgtccatcataacattgctggtgtaatggtaccctggctg
tatgtgggaatgctattctcatcattttgttggcattttgaggatcactgtttctattca
atgaattatctacactggggagagccaaaatgctggtacagtgtccctggtagtgaagcc
attgcttttgagaaggtgatgcggaactgtcttcctgatctatttgatgcccaaccggat
ctgctctttcagcttgtgaccatgctgaacccatctgtgttgcaagaaaatggagtttct
gtttatagtgtacttcaggagcctggaaactttgtcatcacctttcccagatcttatcat
ggcggtttcaattttggcttaaattgtgccgaggctgtcaattttgctcctgctgactgg
cttcctcatggtggatttggagcagagctatatcagctgtatcggaaagctgctgtttta
tctcatgaagagctgctctgtgtggtagccaaggctaatgactgtgatagcaaagcatta
ccttatttgaagaaagaattgcatagaatatatgccaaggagaaaaattgtagagaggga
ctctggagcaatggcatcatcaagtcatctcctatgtcaccaaagaagtgtcctgaattt
gtgggtactgaagaggatccaacatgcattatatgccagcagtacctgtttctttctgct
gttgtttgctgctgtaggccatctgcttttgtatgtcttgagcattgtaagcatctttgt
gaatgcaaacccaacaaacatcgccttctgtaccgtcacacactggcagaattgaagcag
ttggtgctgttgatagataaatataactttgacgagacaccccaatgtagagatttacaa
aggcagctttcatgttctgatgattcgaatgctttgacaaaaaaggtgaaaggtggccat
gtttctctcgccaaactggcagaagaatggattttgcgttcttctaagatttttcagatt
ccattttccagagacgcttatgttaatgcattgaaggaaactgaacaatttctttgggct
ggttctgaaatggatgcggtgagggccgtggcaaagaatttgattgaagcccagaattgg
gctgaaggcataaaagattgtctttataaaattgaatcatggtcatgtaatcggagccac
aatttggagaaagtagatttggaacatgttaacaattttctgaatttgaatcctctgcct
tgcattgagcctgggcatcttaaattaaagggttatgcagaagaggcaatgattttggtt
caggaaattgattctgccttgtcaacgagttcaaaatcctctatccctgagttggaacag
ctatattccagagcgtgtgaggtacctatctatgtaaaggaaatggagaagttgatggca
aggatttctgcattgaaggtttgggtggacaatgtaaaaaaatgcatccttgagaaatgc
cctgcagcaattgaggttgatgtcctttacaggttaaagtcagagatgctggagcttcaa
gttcagctccctgaagtagaaatgcttatggatcttttacgacaagttgaatcatgtcag
gcccgatgtaatgagatattgaatggtcctattaatctcaagcagaatgttgaagtgctt
cttcaagaattggaaagcattactgtcaacatcccagagttgaaacttctgaggcaatat
catggtgatgctgtttcctggatttcacactttaatgatgttcatgtgaacattcatgaa
cgggaggatcaagaaaatgtagttgatgagttacagtgcattctaaagcagggattgttg
ttgagaattcaagttgatgagttgcctcttgtggaggttgagttgaagaaggcttattgc
aggaaagaggctctgaaggtattcaatgcgcgtcgtactaaaatgactctgttctccatc
cagcaactaatggaggaggctgccatgctacggatcgaaggagagcaattatttgttgat
gtttctggagtacttgcagctgctatgcattgggaagaaagagcagcacatatttttgca
actgaggctcagatgtctgacttcgaggatgttataaggacttcaaaggacatacatgtg
attctaccttctcttgatgatgtcaaggatgcaatttcaatggctaagtcctggttaaag
aactctaagccatttttagggtcttcttttcctgccgcacatccctcctgttccttgctg
aaagttgaggcactgaaggagttggtttctcagtcaaagcttttgaagatatccctggaa
gaacgaaccatgatccattctgttttaaagaattgcttggaatgggagcatgattcctgc
tctctgttagaagaagtggattgcctatttaacacgaataatattgacaatgcattgatt
aatggtcttattccaaaaatcgagcatcttgttactatgattgaatctatcttggaaact
ggtttatctcttggttttgattttgatgagattccaaaacttcaaaatgctcgctctata
ctgcaatggtgcaataaggctctttctttctgttctgtagctcctgcacttccggggatc
gagagcttgatggagaatgcagaacaccttcctgttacatgcgcctccagtgctctctgc
agctcattgattgatggggttaaatggcttaagaaagcatcagaggtgattcctgtttca
tgcaatggcaaaatatgcaaattaagtgatgccgaagaagttctttccgaagttcagagg
attaaagtttcctttccattgatggttggtcaacttttaaaagctattgagaaacataag
ttgtggaaagagcaaattcttatcttttttggtttgaaaactgaagaacgatcttggtct
aaattgttacaacttaaggaacttggaaaggatgatgctttcagttgttgtgagttagat
atggttttatctgaaactgaaaaggtagagaagtggaagctacactgcatggacattgtg
gggcacccagttggagatgtgaattctttgctcgatgctttagtaaagattaaacatact
ctagatagatctttgtatatatacaagaaggccaggggttgcaatcccagagatccatgc
attcactgcttcagtgacattaaggatcaggagttactaacctgttcgatatgcaaggac
tgctaccatttgcagtgcctaggagcaacactaggtcatcaaagtgatgcaaaagcatat
gtatgctcttattgccaattcatagggagtgggtccatttctcgaaatggtggtgctctg
agatttggagggaaacgcccagaactgaacatgctcattgagcttctgtctgatgctgaa
ggtttatgtgtagggattgaagaaagagatgtagtacagcaacttgtggagctagctatt
gcctgcaaagattgtctaacagaattgacagactttaccttagcttatcttaatagagat
ctcagcatcatctcagaaaaactaactactgctctgaaggcagttgaaatggcaggtgtc
tattataatcatggaaacaacagacttgagctggcattagcaagaaactcatggagagtc
agggtgaataaattgttagaggattctcagaagcccctgatccaacatattcaaaaattt
ttgaaagagggattggccataagcataccacctgaagatcacttctggcagaaacttaca
gaattgaagtgcattggcttgcaatgggcagaaaatgctaagaaggtttccatggactct
ggggcacttggattggatgaagtttgtgaacttatcacacagggtgaaaacttgcctgtt
cattttgaaaaggaacttaagttattaagagctcgaagtatgctttactgcatttgccga
aagccctatgatcagagagcaatgattgcctgtgatcaatgtgatgagtggtatcacttt
gattgtatcaaattatcttcagaaccaaaaatctatatctgccctgcatgtaagcctcac
acaggggagctatctgttctactgtcagtgaataaggagagatcaactggagctaaatat
ggagaacctcagacaccctctccaccacacacagaatcaagaaggaaaaatatagaagct
aagccgagcctaaagcaaatgatgcctgcagctatggatcacggtaatatcttaaggtat
tctgatggaattgattgtttgttttggagaaaccggaagcctttcagaagagtggctaaa
aggcgagctgaggttgaaagcctctccccatttttccatatacagtga

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