KEGG   Vitis riparia (riverbank grape): 117933039
Entry
117933039         CDS       T07274                                 
Name
(RefSeq) splicing factor SF3a60 homolog
  KO
K12827  splicing factor 3A subunit 3
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117933039
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vri03041]
    117933039
Spliceosome [BR:vri03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    117933039
 Complex B
    117933039
 Complex C
   U2 SnRNP specific factors
    117933039
SSDB
Motif
Pfam: SF3a60_Prp9_C SDE2_2C SF3A3 SF3a60_bindingd ATP-synt_F6 Desulfoferrod_N FAM81B
Other DBs
NCBI-GeneID: 117933039
NCBI-ProteinID: XP_034710280
LinkDB
Position
16:22709314..22720291
AA seq 509 aa
MSSTLLEVTRAGHEEIERLERLIVKDLQNEPASSKDRLFQSHRVRNMIDTITITTEKLID
IYEDKDNARKDEIAALGGQTATGSNVFSAFYDRLKEIREYHRKHQAARVVDANEEYEELL
KEELRIEFRGEEAFGRYLDLHELYNEYINSKFGEHIEYSAYVEVFSEPQKIPRKLKLTRQ
YREYLENLLEYLIYFFERTEPLQDLDRIFTKLATDFEEQWANGMVEGWENESQENGNVPT
QHAAIDLDYYSTVEELMEVGPEMLKEALAALGLKTGGTVQQRAERLFLTKHTPLERLDQK
HFAKGSRRSEQNGTPAAPKEADNSKEIALLEAKLRKICELLYETIVRTKENIEKKQALTY
EEMEAEREEEEVQADTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICG
NHSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIKEAKVLWERIQERQGLNKWR
PDLEEEYEDKEGNIYNKKTYTDLQRQGLI
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtcgtcgactctactggaagttactcgagcgggtcacgaagaaatcgagcggcttgag
cggctcatagtgaaggatctgcagaacgagccggcttcgagcaaggaccgcctatttcag
agccacagagttcgaaacatgatcgacaccatcaccattacgacagagaaactcattgat
atttatgaagacaaagataatgcaaggaaggatgagattgcagcgcttgggggtcagacg
gcaaccggatcaaatgtgtttagtgcattttatgacagattgaaagagattcgtgagtac
catagaaagcatcaagctgcacgtgttgttgatgctaatgaggagtatgaggagctactc
aaagaggaactgcgaattgagtttcgtggagaggaagcctttggacgttatttggacctg
catgaattgtacaatgaatatattaattcaaaatttggggagcacattgagtactctgct
tatgttgaagtcttttcagaaccacaaaagatccctcgtaagttgaagttgacaaggcaa
tacagggagtatttagagaatctactggagtatctgatatattttttcgagcggacagag
ccattgcaagatctcgatagaatatttacaaagcttgcaaccgattttgaagagcaatgg
gcaaatggaatggtagaggggtgggagaatgagagtcaagaaaatgggaatgttccaact
caacatgcggcaattgatcttgattattatagtacagttgaagagctgatggaagtgggt
cctgaaatgttaaaggaggcattggctgctctaggactaaagacaggtggtactgttcag
cagcgtgctgagagacttttcctcacaaagcacacacctcttgagaggttggaccagaag
cattttgccaagggttcacgtcgatcagaacaaaatggtactcctgctgctccaaaagaa
gctgacaattcaaaagaaatcgccctcctagaggcgaagttgagaaagatatgtgaatta
ctgtatgagactatcgtgcgaacaaaagaaaatattgagaagaaacaggctttgacgtat
gaggaaatggaagcagaacgtgaagaggaagaagtacaagcagacaccgaaagtgatgat
gaggagcagcagatctataatcccctcaagttgccaatgggctgggatgggaagcctatt
ccttactggttgtataagcttcatggacttgggcaggaattcaagtgtgagatatgtggg
aatcacagttactgggggcgtagggcttttgagcggcattttaaggaatggcgccatcag
catggtatgcgttgcctcggcattcccaataccaaaaacttcaatgaaatcacatcaatt
aaggaagcaaaggtactgtgggagagaatacaggaacggcaaggactgaacaagtggcgc
ccagatctagaagaagagtatgaagacaaagagggcaacatctacaacaagaagacctat
accgatctgcagcgccaaggcctgatctaa

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