Vitis riparia (riverbank grape): 117933142
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Entry
117933142 CDS
T07274
Name
(RefSeq) WD repeat-containing protein RUP2-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri04120
Ubiquitin mediated proteolysis
vri04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117933142
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
117933142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
vri04121
]
117933142
Enzymes [BR:
vri01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117933142
Ubiquitin system [BR:
vri04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117933142
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
117933142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_EML
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF12
Beta-prop_DCAF4
EIF3I
WD40_like
Beta-prop_TEP1_C
YNR034W-A-like
Motif
Other DBs
NCBI-GeneID:
117933142
NCBI-ProteinID:
XP_034710430
LinkDB
All DBs
Position
16:17796105..17797536
Genome browser
AA seq
382 aa
AA seq
DB search
MKNFSTQFNPQSPEVENPNIQEEKAEQHIEEERARCDWEFNLSTVVTSSSAGASTDTIGV
IEFDPSDNLVATGGIARKIRVYSVKSLLPGENHSHGEHNVKLLQHNNACDYYIWTPAKLS
SLRWKPGSSGRVLGSGDYDGVVTEYDLDRKIPIFERDEHGGRRIWSVDYSHWNPFVGASG
SDDGTIQMWDPRCEGTTNVAKVRPSAGGGAVCCVEFNPFGGPLVAVGCADRRAYGYDVRK
MVDPVLIFDGHQKPVTYVRFLDEHMMVTSGTDGCLRLWSMHDARMIRVYMGHMNTRNFVG
LSVWRTGGLLGCGSENNHVFVYDKRWGEPIWVHEFGGGSRDGCDPKFVSSVCWRQVGEDG
CTLVAGGSDGSLQVIVGKRRAF
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacttctcaacgcaattcaatcctcaaagcccagaagtagaaaacccaaacata
caagaagaaaaggcagaacaacacatagaagaagaaagagctaggtgcgactgggaattc
aatctctccactgttgttacctcgagctccgccggagccagcaccgacaccatcggcgtc
atagagttcgacccctccgataacctcgtggccactggaggaatcgctcggaaaattaga
gtttatagtgtaaaatccttgttgcccggcgaaaatcatagccatggtgagcacaacgtt
aaattgttacaacacaataatgcatgtgactactatatatggaccccggctaagctcagt
agcctaaggtggaaaccgggctcctccggccgagtactcggctccggcgactacgatggg
gtggtcaccgagtacgacctcgaccggaaaatccccattttcgagcgagacgagcacggt
ggacgtcgaatatggagcgtggactactcacattggaatccgtttgtgggtgcgtcgggg
tctgacgatggcaccatacaaatgtgggatccacgttgcgaaggaacaacgaatgtagcg
aaagtacgacccagtgcgggcggaggcgccgtgtgttgtgtggagttcaaccccttcggc
ggtccattggtcgccgtcgggtgtgcggaccgaagagcctacggctatgacgtgaggaag
atggtcgacccggtactaatattcgacggacaccaaaaaccggtgacctacgtgcggttc
ctggatgagcatatgatggtaacgtcagggacggatgggtgcttgaggctttggagtatg
catgatgcccgaatgattcgggtgtacatggggcatatgaatactcggaactttgttggg
ttgtcagtgtggaggacaggcgggttactgggatgcgggtcggaaaataaccatgtattc
gtgtatgacaagaggtggggtgagcccatatgggtgcatgaattcgggggagggagtaga
gatgggtgtgacccgaaatttgtgagcagcgtgtgttggaggcaagtgggcgaggatggg
tgcacccttgtggctggtgggtcggatgggagtctgcaggtgattgtggggaagaggagg
gcattttga
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integrated database retrieval system
