Vitis riparia (riverbank grape): 117933542
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Entry
117933542 CDS
T07274
Name
(RefSeq) serine/arginine-rich splicing factor RS41 isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117933542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vri03041
]
117933542
Spliceosome [BR:
vri03041
]
Common components
Common spliceosomal components
SR proteins
117933542
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RNA_bind
RRM_5
RRM_Nup35
DotY
DUF2129
Motif
Other DBs
NCBI-GeneID:
117933542
NCBI-ProteinID:
XP_034710843
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All DBs
Position
16:16481216..16486983
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AA seq
480 aa
AA seq
DB search
MKMRPIFCGNFDYDARQSDLERLFRRYGKVDRVDMKTGFAFIYMEDERDAEDAIRGLDRT
GFGRKGRRLRVEWTKQERGIRRPSGSRRSSTNLRPAKTLFVINFDPYNTRTRDLERHFDP
YGKILNIRIRRNFAFIQYESQEDATRALEATNMSKLMDRVISVEYAVRDDDERRNGYSPD
GRRRDKSSERSYDKGRSLSPYRRERGSPDYGRGSSPSAYRRERASPDYGRDPSPSPRRRD
RAMPDHGRSRSPSHHRRERTSHDSARGPSRSPYRSERSDRAIPDYGRGRSPSPGRREKIM
PDYPDRPSLSPERKEKTGRSEKAIPDYGRGASPSSPRRERTNSDYVRANSRSRSRSQSQS
PRQRERTKPDYGHERSVSPEQREKANPDHGRGPSRSSPRREYDRGPSQSPQQGERALPDY
ARGPSDSPYQRESISPDYDRGPSPNSKREERDSPNYGGSASPMNGRYRSRSPPARERSRS
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgaggcccattttctgtggtaactttgattacgatgcaagacagtctgatttg
gagcgacttttcagaagatatgggaaggttgatagagttgatatgaagactggatttgcc
tttatatatatggaggatgaaagggatgctgaggatgcaattcgaggacttgatagaaca
ggctttggaagaaaagggcgcaggcttcgtgtcgagtggacaaagcaagaacgtggcatt
agaaggcctagtggttctagaagatcttcaaccaatttaagacctgcaaagacactattc
gttattaattttgatccatataatactaggacaagggacttggagagacactttgatcca
tatgggaaaatattaaacataaggatcagaaggaattttgcatttattcagtatgaatca
caagaggatgccactagagcattggaggctacaaacatgagcaagttgatggatcgagtt
atttcagtggaatatgcagttcgagatgatgacgaaaggagaaatggatatagccctgat
ggacggaggcgcgataagtcatctgagagaagctatgacaaaggacgatccttgagtccc
taccggagggagagaggtagtcctgattatggtcgtggctctagcccaagtgcctacaga
agagagagagccagtcctgattatggccgtgaccctagccctagtccccgtcgaagagat
agggctatgcctgatcatggccgtagtcgtagtcctagtcatcatcgaagagagaggact
agccatgattcagctcgtggccccagccggagtccatatcgaagtgaaagaagtgacagg
gccattcctgattatggccgcggtcgcagtccaagtcctggacggagagagaagattatg
cctgactatccggacagacccagtctgagtcctgagcgaaaagagaagacaggacgatca
gagaaggctattcctgattatggccgtggagctagcccaagttcccctcgtcgagagagg
actaactctgattatgttcgtgccaatagccgcagccgcagtcgcagccagagccaaagt
ccacgacaaagagagaggactaagcctgattatggccatgaaaggagtgtgagtcctgaa
caaagagagaaggccaatcctgatcatgggcgtggtcctagccgaagttccccacgtaga
gagtatgaccgtggtcccagccaaagtccccagcaaggtgagagggcccttcctgattat
gcccgtggccccagcgacagtccatatcaaagagagagtatcagtcctgactatgaccgt
ggtcccagcccaaattccaagcgtgaagagagggacagtcccaattatggtggatctgca
agccccatgaatgggagataccggagtcgttcacccccggcacgtgaaagatctcgatct
tag
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