Vitis riparia (riverbank grape): 117933752
Help
Entry
117933752 CDS
T07274
Name
(RefSeq) structural maintenance of chromosomes protein 6B-like
KO
K22804
structural maintenance of chromosomes protein 6
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vri03400
]
117933752
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
117933752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
DUF948
SbcC_Walker_B
AAA_21
AAA_29
Sipho_Gp157
SMC_hinge
ABC_tran
Laminin_II
Motif
Other DBs
NCBI-GeneID:
117933752
NCBI-ProteinID:
XP_034711163
LinkDB
All DBs
Position
16:complement(5351172..5449978)
Genome browser
AA seq
1057 aa
AA seq
DB search
MGDSTVFTQPLSASHRSSAGIILKIRLENFMCHSSLQIELGEWLNFVTGQNGSGKSAILT
ALCVAFGSRAKETQRATTLKEFIKTGCSYAVIQVEIKNEGEDAFKPEIYGDVIIVERRIS
VSTSSTVLKDHQGKRVASRKEDLHELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFK
FFFKATLLQQVNDLLVNIGTRLDSANTLVEELEKSIEPILKELNELQVKIRNMEHVEEIS
QQVQQLKKKLAWSWVYDVDRQLQEQSAKIEKLKDRIPTCQARIDRQLGKMEELRECLTKK
KTQIACMMEKTTEVRRMKEDLQQRLSLATKERLELEEEHCRKTNKIQKMVNLVRRLDQQV
HEVHEQDLKNTQAEESEIKEMLKGLQDELDTTNLILSRLKEEESALSASLSIKMDEIRKI
SDEIDDYERKHRENHSYICELQQHQTNKVTAFGGDRVIQLLRAIERHHQRFKRPPIGPIG
AHLTLVNGDIWAIAVENAIGKMLNAFVVTDHKDSLLLRGCAREANYNHLQIIIYDFSRPR
LNIPYHMLPQTQHPTLISALHSDNPTVMNVLVDMGNAERQVLVRDYEVGKTVAFDQRIPN
LKEVYTSDGYRMFSRGSVQTILPPNKKARTGRLCSSFDSQIKDLERYALDIQEHGQDVKR
KKRNAEEELQDLQDKLQSIKRRRLNAERDVMSKKLRLQDVKNSYVAESNPAPASSVDELH
HEISKVQAEIREKEILLEDFQLRMSKADAKANDLKLSFENLCESAKVEIDAYEAAENELV
VIEQELCSAETEKTHYEGIMNNKVLPDIKEAETQYQELEHNRKESCRKASIICPESEIEA
LGGCKSTPEQLSAQLNRLNQRLQSESQRYAEPIEDLRMIYDKKERRILRKQQTYEAFREK
LNACKEALDLRWSKFQRNATLLKRQLTWQFNAHLRKKGISGHIKVSYEEKTLSVEVKMPQ
DASNNIVRDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISLDTLV
NFALAQGSQWIFITPHDISMVKQGERIKKQQMAAPRS
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgggagattctacggttttcacccaacccctatcggcatctcatagatcttctgctggc
atcatcttaaagatccgattggagaacttcatgtgccacagtagcttgcaaatcgagctc
ggcgagtggctcaattttgtcactggtcaaaatggaagtggtaagagcgcgatattgact
gcgttgtgcgttgcgttcgggtcccgagctaaagaaacgcaaagggcgaccacgttgaag
gagttcatcaaaactggttgcagttatgcggttattcaagtggaaataaaaaatgaaggg
gaggacgcctttaagccagagatatatggtgatgtcataattgtggaacgtcggatttct
gtatctaccagctccactgttttgaaggatcaccaagggaaaagggttgctagtcgaaaa
gaggaccttcatgagcttgtagaacattttaatattgatgttgaaaatccatgtgtgata
atgagtcaagacaaaagcagagaatttttgcattcagggaatgacaaagataaattcaag
ttctttttcaaggctacactgcttcagcaggtcaatgatctactggttaatattgggact
cgtttagattctgcaaatacactggtagaggaactggaaaaatcaatagaaccaattctg
aaggaacttaatgagttgcaagtgaaaattaggaacatggagcatgtagaagaaatttct
caacaagtacagcagctgaaaaagaaacttgcctggtcatgggtatatgatgtggaccga
caactccaggaacaaagtgcaaaaattgaaaagcttaaagatcggataccgacttgccaa
gctaggattgatcgacaacttggtaaaatggaggagttgagggagtgcttgaccaagaag
aaaactcaaattgcatgtatgatggaaaagacaacagaagtgaggagaatgaaggaggac
ttgcagcagaggctttccttggccacaaaagagaggcttgagctagaagaagaacattgc
cggaaaactaacaaaattcagaagatggtgaatcttgttaggcggcttgatcaacaagtt
catgaggttcatgagcaagatctaaaaaatactcaggctgaagaatctgaaataaaggaa
atgctgaagggactccaagatgagcttgatacaacaaatttgatactatcaaggttgaag
gaagaagaaagtgccttatcagcaagcctatccatcaaaatggatgaaatcagaaagatt
tcggatgagattgacgattatgaaagaaagcatcgtgaaaaccattcttacatctgcgaa
cttcagcaacaccaaaccaacaaggttacagcttttggaggggatagggtgatccaactt
ttacgtgcaattgagagacatcatcaaagattcaaaaggccacccattggtccaattggc
gcccatttgactttagtcaatggcgacatatgggctattgctgttgaaaatgccattgga
aagatgcttaatgctttcgttgtgacggatcataaagattcccttcttttgagaggatgt
gctagagaagcaaactataaccaccttcagataatcatatacgacttttcaaggccaaga
ttgaatattccatatcacatgcttcctcagacacagcacccaactcttatttctgctttg
cattcagacaatcctactgtaatgaatgtcttggttgatatgggcaatgctgagagacaa
gtgcttgttagagactatgaagttggaaaaacagttgcttttgaccaaagaattccaaac
ttgaaggaagtttacacatcagatggatatagaatgttttctcgtggttcagtccagacc
attcttcctccaaataagaaggctagaactggccgcctttgtagttcttttgacagtcag
atcaaggatcttgaaagatatgcattagacattcaagaacatggtcaggacgtaaaaaga
aagaaaaggaatgcagaggaagaacttcaggatcttcaagataaactacagagtataaag
aggaggcgtcttaatgctgagcgggatgtgatgtcaaagaaactaagattgcaagatgtg
aagaattcatatgttgctgaatccaatccagcacctgcatcttctgttgatgagcttcat
catgaaatctcaaaagtacaagctgagatacgagaaaaggaaatcctgttagaagatttc
caattgagaatgagcaaagcagatgcaaaggctaatgatctgaaattatcctttgagaat
ttatgtgaatcagcgaaagtagaaattgatgcctatgaggcagcagagaatgaactagta
gtgattgaacaagaattgtgttctgctgaaacggagaaaacccattatgaagggataatg
aataacaaggtgcttcctgacataaaagaggcagagacacagtatcaggagcttgaacac
aatcgtaaggagagttgcaggaaggcttctattatttgtcctgaaagtgagattgaagct
ttgggaggctgcaagagcaccccagagcaactgagtgcccaattaaataggctgaatcag
agacttcaaagtgaaagccagagatatgctgaacctattgaggatctcagaatgatttat
gacaaaaaagagcgcagaattttgagaaaacagcaaacttatgaagcttttagagagaaa
ttgaatgcatgcaaggaagccttagacctgcgatggagcaagtttcagaggaatgccact
cttctaaagcgccagttgacttggcaatttaatgctcacttgagaaagaaagggatcagt
gggcacattaaagttagttatgaagagaaaaccctatcagtggaggtaaagatgcctcaa
gatgcatcaaacaacattgttcgtgatactcgagggctttcaggtggggaacgctctttc
tcgacattatgctttgcattggctctacatgagatgacagaatccccattcagagcaatg
gatgagtttgatgtgtttatggatgcagttagccggaagatcagcttggacacccttgtg
aattttgcattggcacaaggatctcaatggatttttatcactcctcatgatatcagtatg
gttaaacaaggggagaggataaagaagcagcaaatggcagcccctcgttcttga
DBGET
integrated database retrieval system
