Vitis riparia (riverbank grape): 117934213
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Entry
117934213 CDS
T07274
Name
(RefSeq) RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
KO
K03093
RNA polymerase sigma-I factor
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117934213
Transcription machinery [BR:
vri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
117934213
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
Response_reg_2
GerE
Motif
Other DBs
NCBI-GeneID:
117934213
NCBI-ProteinID:
XP_034711759
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Position
16:20263451..20266994
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AA seq
516 aa
AA seq
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MGVVTVSSSASRTPFGLNAKFSNHQTPSRRPLVLAFKADKAKNIALVTPHEPIPLPIETS
KDHKKRLGRASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAEDLE
RVVRRGRQRRKRVTLADDKAEKEISDNVVRIHNKKPKRLSLEKRIALSKMKQEKVVASIQ
KKRDSKNEDENIDMLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKGLLEV
KENLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYFQE
FANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVSFG
LESVRVEIQRAKLELLFKLQRLPTVEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQ
EEYINGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEI
AGNLSISREMVRKHEVKALMKLKHPARVDYLRQYIF
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgggagttgtgactgtttctagctcagcttctcgaaccccatttggattgaacgcaaaa
ttttcaaatcatcaaaccccttcgaggaggcccctagttttggcattcaaagcagataaa
gccaagaacatagctctggttactccccatgagccaatccctttacctatagagacttct
aaagatcataagaagagacttggtagggcttccaagccttcaaagagagtaaaagcggtc
agtacagatgaagtatcgccatgtagtgtagaattggattacaatgaagctgctgccaaa
cttgaaaatatatacaagcttagccctgcaactgatgtttcagaggcagaagatttagaa
cgtgtcgttaggagagggcgacagaggaggaagagagttactttggctgatgacaaggca
gagaaggaaattagtgataatgtagtgaggatccataataagaaaccgaaacgattgagt
cttgagaagaggattgctttgagtaagatgaagcaagaaaaagtggttgcttcaattcaa
aagaaaagggacagtaaaaatgaagatgaaaatattgatatgcttgttagggagtactca
gcttctactgacttggtcagcttggactggaagaaaatgaagataccacccgtgcttcct
tcctcagagcatgcatggctattcaagctaatgcagcccatgaagggactccttgaagtg
aaagaaaacttacaaaaggatttggggagagaaccaactgatggggaattagcagaggcc
atgagtatgagtgcagttcaagtaagaagacacatggaagttggtcaagcagcaagaaac
aagctgattaagcacaatcttcgactggttttgtttgtaatcaacaagtactttcaagag
tttgccaatggcccaaagtttcaagacctgtgtcaagcaggagtgaagggccttatcaca
gccatcgatcgctttgaaccaaaaaggagtttccggctctcaacctatggtctgttttgg
attaggcatgccatcatgcgctccatgacactctcaagctttacacgcgtctcctttggc
cttgagtcggttagggtagaaatccaaagagcaaaactagagttgttgttcaagctccaa
agattaccaacagtggaagagataatagaaaaggtcggaatctcccctgagaggtaccat
gaagtgatgagggcctcaaaatccgttctctctctccatgcaaggcatgcaaccacacaa
gaagagtacatcaatggaattacagatgttgaaggtgttgggggtgatagggggcggcaa
cttgctcttctcagacttgctcttgatgatgtgctcgattctctgaagccaaaggagagc
ttggtgatgagacagagatatggtcttgatggtaagggtgatcggacactgggggagatt
gcaggaaacctaagcatctcaagagaaatggttcgaaagcatgaggtgaaggctctcatg
aagctcaagcatccggcacgagtggattatcttcgccaatacatattctaa
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