Vitis riparia (riverbank grape): 117934222
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Entry
117934222 CDS
T07274
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri00040
Pentose and glucuronate interconversions
vri01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117934222
Enzymes [BR:
vri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
117934222
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
117934222
NCBI-ProteinID:
XP_034711769
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Position
16:100920..103039
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AA seq
395 aa
AA seq
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MAFHGCCFTLALALLLHILVILFTPNTILPANAHRSSNSPPAMKLNVIDRCWRRSRNWQR
HRQQLATCSVGFAGKMTNNIGTDLIRYKVTDPSDHPFNPKPGTLRFGATNIKGKVWITFK
QSMRIKLEKPLLISSFTTIDGRGASIHIAGGACLLLHEVTNVIIHGIRIHHCRAQMPGQV
LGPDSKMMELGHVDGDAIRLVASSQIWIDHNTLYECQDGLLDVTRGSTDITISNNWFRNH
DKVMLLGHDDEYLQDKNMKVTVAFNHFGPKCYQRMPRVRHGYTHVVNNLYLGWEQYAIGG
SMNPSVLSEANLFIAPESGTKEVTWRQDNNENGRSWNFQSVRDVFENGAHFSQTGDSAKR
PHYNHLQTFRVADAKAVRPITRSSGALRCRKRSRC
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggctttccatggatgctgcttcactttggctttggctcttctccttcacatccttgtc
atcctcttcactcccaacactattcttccagctaatgctcatagatcaagtaactcccct
cctgccatgaagttgaacgtgattgatcgatgctggagaaggagccgtaactggcagagg
cacagacaacagctcgcaacctgctcggtgggttttgctgggaagatgactaacaatatt
ggaacagacttgatacgctacaaagttacagatcctagtgaccacccctttaatcccaag
ccaggaactctcagattcggtgccaccaacattaaaggaaaggtgtggataacattcaaa
caaagcatgagaatcaaactcgagaaaccgctactcattagtagtttcaccaccattgat
gggagaggtgccagcattcacattgcaggaggtgcatgcctcttgcttcatgaggtgact
aatgtaatcatccacggtatccggattcaccactgccgtgcccaaatgcctggtcaagtg
ctgggtccagattcaaagatgatggagctgggtcacgtagatggggatgcaatcaggctg
gttgcatcctcacaaatttggatagatcacaatacactctacgagtgccaggatggtctc
ctggatgtcacccgtggttctacagatataaccatctcaaacaactggttcagaaatcat
gataaagttatgctcctaggccatgatgatgagtatcttcaagacaagaacatgaaggta
acagttgccttcaaccattttggtcctaagtgctaccagcggatgccaagggtccgccat
ggatatacacatgtagtcaacaacctctatctgggatgggaacagtatgccataggagga
agcatgaaccctagcgttttgagtgaagcaaacctctttattgcaccagaatcagggacg
aaagaggtaacctggagacaagacaacaatgaaaatggaagatcatggaattttcagtct
gtgagggatgtttttgaaaatggagctcatttcagccaaacaggtgactctgcaaaaagg
ccacactataaccatctacagacgttccgagttgcagatgccaaagcagtaaggccaatt
acaagatcatcaggtgctttgcgatgccgtaaaagatccagatgctga
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