Vitis riparia (riverbank grape): 117934259
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Entry
117934259 CDS
T07274
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117934259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vri03041
]
117934259
Spliceosome [BR:
vri03041
]
Complex A
Other components
Complex A specific factors
117934259
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
KH-I_KHDC4-BBP
SF1-HH
RRM_1
KH_1
KH_12
RRM_5
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
117934259
NCBI-ProteinID:
XP_034711821
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Position
16:complement(17604458..17608934)
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AA seq
751 aa
AA seq
DB search
MEKHEASYLPRIRKKYSIEVDKSNKVTTVELRAQCVLQSFLDRDDDESEEWELDEFVSLS
RYNDEKERPIEDPDMDSLGKSVSKSSSDSDPDEAEAGLEAISRSLIENKGSLDVIANEPA
PLQDFQTLKKCKQDESSNLEADVGSVVADLHDKSGVPMAPVTDESASENQEHAGSSGKRR
LSRRDQKPEVDGETDEGNRTRKRRKTRWTGDDSQLKILGPIQLPSFVKDFVTSDLDPEIQ
ELKVELFEINSKLQRPELHDDCPKEDRSPSPEPVYDYLGNRKNTRDVRLREKLIKKRQCI
ISRLIGKNSTFKPAADYKPPKLIKKLYIPEKEYPDYNFVGLIIGPRGNTQKRMEKETGAK
ILLRGKGYSLKTPRRTKASDNEDLHVRIEADNQNSFDAAVRMVEKLLIPIDRGINAHQQA
QLLELGKLNGERNKNMCRCCYDEGHPHYACPHLQSTFQSSLSCDICGSNNHATPSCPLIA
SSQGSNSLWGSSGLEIGSTPDTQSKPNKETSDADLYVGYLPQTMDENCLAELFAPFGKIA
KTKVIKDRATGISRGYGFVKFENPAHAALALSHMHGYKIDGKTLAVREGTRQWVTGSSVL
SPDPNHPGSIAASQDAVRQTGFPVPPGSLLPQHQTMFPETKRMALPPPATYHLGPFDFFP
KSKGLGFPPVYSILNSQGRSGFEYGYIATQVPFSSPSSLLQFPGDPSYPGSQFKSYFATE
TSNPSSSFKISPTPGSNLKPIPWPITHLTQW
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggagaaacatgaagcttcataccttccaaggattagaaagaaatatagcatcgaagtg
gataaatcaaacaaggtaactactgtggagctgcgagcacaatgtgttctccagtccttt
ttagacagggatgatgatgagagtgaggaatgggaacttgacgaatttgtttctttaagc
cgttacaatgatgagaaagaacggccaattgaagatccagatatggattcattggggaag
tctgtgtcaaagtcatcttctgatagtgaccctgatgaagctgaggccgggttggaagcc
atttctagaagtttgattgaaaataaggggtcactagatgtaatagccaatgagccagct
ccattgcaagactttcagacactaaagaagtgcaagcaagatgaatcatcaaaccttgaa
gcagacgttgggtctgtagttgcagatctccatgataaatctggggttcctatggcacct
gttactgatgaaagtgcctctgaaaatcaggagcatgcaggaagttctgggaaacgaagg
cttagtagaagggaccaaaaacctgaagtagatggggaaactgatgaaggcaataggact
cgcaaaagaaggaaaaccaggtggactggtgatgattctcaattaaaaatacttggtcct
attcaactacctagcttcgtgaaagactttgttacatctgatctggatccagaaattcag
gagttgaaagtggaactgtttgagataaatagcaagttgcaaagaccagagcttcatgat
gactgccccaaggaagacagatctccttctccagagccagtgtatgattaccttggtaat
agaaaaaatacaagggatgtaaggctccgtgaaaaactcatcaagaagcgtcaatgtatc
atttccaggttgattgggaagaactccacctttaaacctgctgctgactacaagccacca
aagctcattaagaaactctacattccggagaaagaataccctgattataattttgttggt
cttataattggtccacggggaaatactcaaaagaggatggagaaggaaactggggctaag
attcttttaaggggtaaaggttactccttgaaaacgccacgcagaactaaagcttctgat
aatgaagatttacatgtccgtatagaggctgataaccaaaattcctttgatgcagctgta
agaatggttgagaaactactaattccaattgaccgtggaataaatgctcaccaacaagcc
caattattggagcttggcaaactgaatggagaacgaaacaaaaatatgtgccgatgctgc
tatgacgaagggcatccacattatgcctgccctcacctacaatctacttttcaaagctcg
ctctcttgtgacatttgtggcagcaacaaccatgccacaccctcttgccctttgatagca
tcatctcaaggtagcaactctctgtggggttcatctgggcttgaaattggttcaacccca
gacacacaaagcaaacccaataaagaaaccagtgatgcagatctctatgttggttatctt
cctcaaactatggacgagaattgtttagcagagttgtttgctccattcggtaagattgct
aaaacaaaagtgattaaggaccgagccacaggtatcagtagaggctatggctttgttaaa
tttgaaaatcctgctcatgctgctttggctttatcccacatgcatgggtacaaaattgat
gggaagacattggcagtaagggagggtacacgccaatgggtcacaggatcctcagttttg
agccctgatccaaatcaccctgggtcaatagcagcttctcaagatgccgtgcgtcagact
ggtttccctgttccaccggggtcattgctaccgcaacatcaaaccatgtttcctgaaact
aagagaatggctttgcctcctcctgccacctaccacttggggccgtttgattttttccct
aaaagcaagggattgggttttcctcctgtgtacagcatcttgaactcgcagggtagaagt
ggcttcgaatatggttacattgctacccaagttccattctcgtcacctagttcactttta
cagtttcctggggatcctagctaccctggttcccaatttaagtcatattttgccacagag
acatccaacccatcctcatcattcaaaatcagcccaaccccaggaagtaatctgaaacct
attccttggccaatcacccatcttacacagtggtga
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