Vitis riparia (riverbank grape): 117934376
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Entry
117934376 CDS
T07274
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117934376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117934376
03012 Translation factors [BR:
vri03012
]
117934376
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117934376
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117934376
Translation factors [BR:
vri03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117934376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
nSTAND3
AAA_16
T2SSE
ATPase
NACHT
PhoH
ABC_tran
Dicer_dimer
AAA_30
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
117934376
NCBI-ProteinID:
XP_034711917
LinkDB
All DBs
Position
17:17999614..18043286
Genome browser
AA seq
1193 aa
AA seq
DB search
MPYPYASIFQGCFRTTMSLKPVPLQFHIRPYHKTPKMFRPLLFTPMRAHVSAGGSLYLRS
VVACSASSGACARSLELDWRQRNVALPYLFHQNSRYGRFAYDDFSEYDSDREVESAQQQQ
MRASTHENIDEWKWKLTMLIRNKDEQEVVSTEKKDRRDFEQISALATRMGLYSCQYSRVV
VFSKVPLPNYRSDLDDKRPQREVVLPFGLQREVHAHLKEYLSQKSMSRESFSDKTLSRSI
GNSSVTEEGFYEQQEPLTQTSVVMERILKRKSLQIRNQQQDWQESSEGQKMQEFRRSLPA
YKEREALLNAISQNQVVVVSGETGCGKTTQLPQYILESEIEAARGAFCSIICTQPRRISA
MSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVI
VDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPSIHIPGFTYP
VRTHFLENILEMTGYRLTPYNQIDDYGQEKVWKMQKQALRKRKSQIASSVEDALEVANFD
SYSPRTQDSLSCWNPDSIGFNLIEHALCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHP
LLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGK
AKETSYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPKCVYDAFSDYQLPEL
LRTPLQSXCLQIKSLQLGSISEFLARALQPPEPLSVQNAIEYLKTIGALDENENLTVLGR
NLSMLPVEPKLGKMLIFGSLFNCLNPIMTVVAGLSVRDPFLMPFDKKDLAESAKALFSGR
TFSDHLALVQAYEGWKEAERQQSGYEYCWRNFLSAQTLKAIDSLRRQFFYLLKDAGLVEN
NTEACNKWSHDEHLIRAVICAGLFPGICSVVNKEKSISLKTMEDGQVLLYSNSVNAREPK
IPYPWLVFNEKVKVNSVFLRDSTAVSDSMLLLFGGRISRGGIDGHLKMLGGYLEFFMKPD
LADTYLSLKKELEELIQQKLLNPTLDVHTNNELLSAVRLLVSEDECNGRFVFGRQLPKSS
KQAIKETSPGALLRSGAGGDNAKGRLQTVLIRGGHQAPVYKTRQLKNNMFRSTVIFNELQ
FVGQPCSSKKLAEKDAAARALEWLMGERQSSTEDIDHMSMLLKKSKGKRRKRT
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgccctacccttacgcctccatttttcaaggttgtttcagaaccaccatgtctcttaaa
cccgttcctctccaattccacatccgtccttaccacaagacccccaaaatgttcaggcct
ttgctcttcaccccaatgagagcccatgtctctgctggcggttccttgtatctgcgatca
gtggtggcgtgctcggcctcttctggtgcctgtgctcggtccctggagcttgattggcgg
cagaggaatgtggccctgccctatttgtttcatcagaattcgcggtatggtcggtttgct
tatgatgatttttccgagtatgactccgaccgtgaagtagagtcggctcagcagcagcag
atgcgtgcttccacccatgagaacattgatgagtggaaatggaaattaaccatgcttatc
cgcaacaaagatgagcaagaagtggtctcaacagagaaaaaggacagacgtgattttgag
caaatttcagcactggcaaccagaatgggcttatatagctgtcagtattcaagagttgtt
gtctttagtaaagttccgctgccaaattacagatctgatctggatgataagcgtccacag
agggaggtggtgttaccttttgggttgcaaagagaagttcatgctcatcttaaagaatac
ctttctcaaaagtctatgagcagggaaagtttttcagataagaccttgtcaaggtcaatt
ggtaacagcagtgttactgaggagggattttatgagcaacaggagcccttgacacagact
agtgtcgtcatggaacgaatcctcaaacggaaaagtttgcaaatacgtaatcaacaacaa
gattggcaggaatcttcagaaggccaaaagatgcaagagtttcgcagaagtctccctgca
tacaaagagagagaggcattattaaatgccatttcacaaaatcaggtggttgtagtctca
ggtgaaactggttgtggtaagaccacacaactccctcagtacattttagaatctgagatt
gaagctgctcgtggagctttctgtagtattatttgtactcagcctagacgaatatcagct
atgtctgtctctgaaagagttgctgcagagagaggtgaaaaactgggagaatctgttggt
tataaagttcggctggagggaatgaaagggagggacactcgccttcttttttgcactact
ggcatattattgagaagattacttgttgacagaaatttgaagggtgtaactcatgttatc
gtcgatgagattcatgaacgtggaatgaatgaagattttctccttattgtcctaaaagac
ctgcttcctcgtcggccagaattgaggctgattctgatgagtgcaactcttaatgctgag
cttttttcctcctactttggtggtgctccaagtatccatattcctgggtttacgtaccca
gtacgaactcattttctggaaaatattctggaaatgactggatatagattgactccttat
aatcaaattgatgattatggtcaagaaaaggtgtggaaaatgcagaaacaagctctcaga
aagagaaagagccaaattgcttcctcggttgaggatgcacttgaagttgctaattttgat
tcatatagcccacggacacaagactctttatcctgttggaatcctgattctattggtttt
aaccttatcgaacatgctctttgccacatagttaaaaaagaaagacctggtgctgtcttg
gttttcatgactggttgggatgacataaattctttgaaagatcagctccaagctcatcct
ctcttgggagatccaagcagagttttgctgcttgcatgccatggttccatggccagctca
gagcagaggttaatatttgataagccggaagatggagtaaggaaaatagttcttgctacc
aacatggctgagactagtatcaccattaatgatgtggtttttgtggttgattgtggaaag
gcaaaagagacgtcatacgatgctctgaataacactccttgtttacttccttcttggatc
tcaaaggcttctgctcgacaaagaagaggaagagcgggtcgtgtacaacctggcgaatgt
taccatctgtatccaaaatgtgtatatgatgctttttctgattaccaattgccagaactt
ctaaggacacctttacagtccncttgtttgcaaatcaagagtttgcaacttggaagtatt
tcagaattcctggccagggccttgcagccaccagaacccttatcggttcaaaatgccatc
gagtatttgaagaccattggggctttagatgagaatgagaatttgacagtgttaggacgc
aacttgtcaatgcttccggttgagcccaaacttgggaaaatgctcatatttggttctctt
ttcaactgtctgaatccaataatgactgttgttgctggtcttagtgttagagatccgttc
ttgatgccatttgacaagaaggatcttgcagaatcagcaaaagctcttttctcaggccgc
accttcagtgaccatcttgcacttgtccaagcctatgagggctggaaagaggctgaaaga
cagcaatctggatacgagtactgttggagaaatttcctttctgcacaaactctaaaagct
attgattcccttcgaaggcaattcttttatttgctcaaggatgctggtctggttgaaaac
aacacagaagcatgcaataagtggagccatgatgagcatctcattcgagcagtcatttgt
gcaggcctgttccctgggatatgctctgttgttaacaaggaaaaatcaatatcattgaaa
acgatggaggatggtcaagttcttctgtactcgaattcggtgaatgcccgggaacctaaa
attccatacccgtggttagttttcaatgaaaaggtgaaggtgaattcagttttcctccgt
gattccactgctgtatctgattctatgcttcttttatttggaggacgtatttccagaggg
ggaattgatggacacctgaaaatgttgggaggatatttggagttcttcatgaaacctgac
ttagcagatacatatctgagcctcaagaaagagcttgaagaactaattcaacagaaactt
ctgaatccaacactggatgtacacaccaataatgagctgctatctgcagtaagattactg
gtttcagaggatgaatgcaatggcaggtttgtctttggccgccagttgcctaagtcttca
aaacaggcgataaaagagacctcgcctggtgcactcttgagaagtggagctgggggtgat
aatgcaaagggtaggctgcaaactgtacttatcaggggtggacatcaggcaccagtctac
aagacgagacaactgaaaaataacatgttccggtccactgtgatcttcaacgaattgcag
tttgtggggcagccttgcagcagtaagaaacttgcggaaaaggatgcagcagccagagct
ctggaatggttgatgggtgagagacaatcatccactgaagacattgaccatatgtcaatg
cttctaaaaaagagcaaagggaaacgtcggaagagaacttaa
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