Vitis riparia (riverbank grape): 117934498
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Entry
117934498 CDS
T07274
Name
(RefSeq) NF-X1-type zinc finger protein NFXL1
KO
K12236
transcriptional repressor NF-X1
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vri03000
]
117934498
04121 Ubiquitin system [BR:
vri04121
]
117934498
Transcription factors [BR:
vri03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
117934498
Ubiquitin system [BR:
vri04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
NFX1 proteins
117934498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_NFXL1
zf-NF-X1
R3H
NCBP3
Motif
Other DBs
NCBI-GeneID:
117934498
NCBI-ProteinID:
XP_034712098
LinkDB
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Position
17:complement(19319554..19323819)
Genome browser
AA seq
1094 aa
AA seq
DB search
MSFQARNDRRDRARFPNQTGRQAWVPRGSAPHAVNSHPNPSSGFNSNPNGIGGDSNFSSA
PPDGPSRGGFGSRNYAARPSNQRRERVDDQEVKGPKDLNSNLPQLVQEIQEKLMKGSVEC
MICYDMVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSSDFSVEKNQGVNWRCPGCQSVQL
TASKEIRYVCFCGKRSDPPSDLYLTPHSCGEPCGKPLNREIIGSGESNEDFCPHVCVLQC
HPGPCPPCKAFAPPRLCPCRKKTITTRCSDRKSVLTCGQRCDKLLECGRHRCERMCHVGA
CDPCQVLVNASCFCKNTVEVVLCGSMAVKGELKAEDGVFSCRWICGKELFCGNHDCDEIC
HPGPCGDCNLMPSRIRTCYCGKTSLQEERRSCLDPIPTCLQICGKPLPCGMHFCKDTCHA
GDCAPCLVLVNQKCRCGSTSRTVECYKTTAEEKFTCEKPCGRKKNCGRHRCSERCCPLSN
SGNVLSGDWDPHLCSMTCGKKLRCGQHSCENLCHSGHCPPCLETIFTDLTCACGRTSIAP
PLPCGTPTPSCQYPCSVPQPCGHLSSHSCHFGDCPPCSVPIAKECIGGHVVLRNIPCGSR
DIRCNKLCGKTRQCGMHACGRTCHPPPCDSSCASGSGLKSSCGQTCGAPRRDCRHTCTAP
CHPSSPCPDSRCNFPVTITCSCGRISATVPCDAGGSSVGFNGDTVSEASIIQKLPVPLQP
VEANGRKIPLGQRKLACDDECAKQERKRVLADAFDITPPNLDALHFGENSVVSELLADLF
RRDPKWVLSVEERCKFLVLGKTRGTTSSLRVHVFCPMLKEKRDAVRLIAERWKLSVNSAG
WEPKRFIVVHVTPKSKIPARVLGAKGSTPLNVLNPPVFDPLVDMDPRLVVSLLDLPRDAD
ISALVLRFGGECELVWLNDKNALAVFSDPARAATAMRRLDHGSVYHGAVVIPQNGIAPVA
SQGANAWGGAAGGMAKEGRNQWKKAVVQESGWSESSWGGEDWSAGSVDLQASVWKGKESP
IVASVNRWNVLEPESVSSSSTSSVKTEDSGKRVGNQSVPGLEPSPSHSNSAETEGDTSEA
DASEVVDDWEKAYE
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgagttttcaagctcgaaatgatcggagagatagagctagatttcccaaccaaaccggt
aggcaagcatgggtccctagaggatctgcccctcatgctgtgaattcacacccgaacccg
tcatctggtttcaattccaatccgaacgggattggtggggactcaaatttcagttccgca
ccaccggatggtccgagtaggggaggttttgggtcaaggaattatgcagctagaccttct
aatcagagaagggagagggtggatgatcaggaggtgaaggggccgaaggacttgaattca
aatttgccgcagcttgtgcaggaaatccaagagaaattgatgaaggggagtgttgaatgt
atgatttgttatgatatggtcaggagatcagctcccatttggtcttgctcgagctgttat
tcaattttccatttgaattgtatcaagaaatgggcccgggcgcctacctctagtgatttt
tctgttgagaagaatcagggggtcaactggcgatgccctggatgtcaatcagtgcagctc
acagcttcaaaggagattcggtatgtttgcttctgtggaaagaggtctgacccgccttcg
gatttgtatttgacacctcattcttgtggagagccttgtgggaagccactcaatcgagag
attataggttctggtgagagtaatgaggatttttgcccccatgtctgtgtcttgcaatgc
cacccaggtccatgccctccgtgtaaggcttttgcaccgcctcgattgtgcccttgtcgg
aagaaaacaattacaacacgatgctctgatcggaaatctgttctcacttgtggtcagcgt
tgtgataaactccttgaatgtgggcgtcaccgttgtgagcgcatgtgccatgttggtgct
tgtgatccttgtcaggttctggtcaatgcctcttgcttttgcaagaacacggtggaggtt
gttctttgtgggtccatggctgtgaagggagaactaaaagcagaggatggtgttttctca
tgtcgttggatctgtggaaaggagcttttctgtggaaatcacgattgtgatgaaatttgt
catccagggccatgtggggattgcaacttaatgccaagcaggattaggacatgctattgc
ggtaaaacatcattgcaggaggaacggcgtagctgtttggacccaattccaacctgtctt
cagatctgtggcaagcccctcccttgtggaatgcacttctgtaaggacacatgccatgct
ggggattgtgcaccatgtttggtgcttgtcaatcaaaaatgccgttgtggatcaacatct
cgaactgtagaatgctacaaaaccacggcggaggagaaatttacctgtgagaagccttgt
gggcggaagaagaactgtggaaggcaccgttgtagtgaacggtgctgtcctctctctaat
tctggcaatgttctctctggtgattgggatccgcacttatgttcaatgacatgtggaaag
aaactaaggtgtggacagcactcttgtgaaaatctttgccatagtggccattgccctcct
tgccttgaaacaatctttactgatttaacatgtgcatgtgggagaacttcaatcgctcct
ccattgccttgtggtacccccactccatcatgtcagtacccatgctcagttcctcagcca
tgtggtcatttatcttctcacagctgccactttggagactgcccaccttgttcagttcct
atagccaaggagtgcattggtggacatgtggttctcaggaacatcccttgtgggtcaagg
gatattagatgtaacaagctttgcggcaagaccaggcaatgtggtatgcatgcttgtggg
agaacttgtcaccctcctccttgtgattcttcctgtgcatctggctctggtttgaagtct
tcatgtggccagacatgtggtgctccgaggagagattgcaggcatacatgcactgcccct
tgtcacccttcatctccttgtcctgattcaagatgtaatttccctgtcacaatcacctgt
tcttgtggccgaataagtgcaactgttccttgtgatgctggaggcagcagtgtggggttt
aatggtgatacagtctctgaagcttccattatccaaaagttgccagtaccacttcaacct
gtggaagcaaatggcaggaaaattcctcttggacagaggaagcttgcctgtgatgatgaa
tgtgcaaaacaggaacggaaacgagttcttgcagatgcttttgatatcacccccccaaac
ttggatgcccttcattttggtgagaattctgttgtttctgaattgcttgcagatcttttt
aggcgtgatccaaagtgggtgttgtctgtggaagaaagatgcaagtttttggtcctaggg
aaaaccagaggaactaccagtagtcttagggttcacgttttctgtccaatgctgaaggaa
aagagagatgctgtaaggctgatagctgagaggtggaagctttcagttaattctgctggg
tgggagccaaagcgttttattgttgttcatgttacgcccaaatccaaaatcccagctcgt
gtgcttggtgctaagggttccacccccttaaatgtgttaaatcctccggtttttgatcca
ttggtagatatggatcccaggcttgttgtttctttacttgatttgccaagggacgcagat
ataagtgcattggttctgaggtttggtggggagtgtgaactagtttggttgaatgacaag
aatgcgctggccgtgtttagtgatccagcccgagcagcaactgcgatgaggaggttagat
catggatcagtgtatcatggtgctgttgtgatccctcaaaatggcattgcaccagtggct
tcacaaggtgccaatgcctggggaggagcagcagggggaatggccaaggagggccgtaat
caatggaagaaggcagtggttcaggagtctggttggagtgagagttcctggggtggtgaa
gactggtcagctggttctgtggatctgcaggcatctgtttggaaagggaaggaatccccc
attgttgcttctgtaaaccgatggaatgttttagagcctgaatcggtttcaagctcatct
acctcttctgtcaaaaccgaggattccggaaaaagagtgggaaatcaatctgtgcccggt
ttggaaccaagtccaagtcattcaaattcagcagagacagaaggagatacaagcgaagca
gatgcatcagaagtagtagatgactgggaaaaggcttatgaatga
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