Veillonella rodentium: 44547418_00651
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Entry
44547418_00651 CDS
T05216
Symbol
cshA_1
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vrm
Veillonella rodentium
Pathway
vrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
44547418_00651 (cshA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vrm03019
]
44547418_00651 (cshA_1)
03009 Ribosome biogenesis [BR:
vrm03009
]
44547418_00651 (cshA_1)
Enzymes [BR:
vrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
44547418_00651 (cshA_1)
Messenger RNA biogenesis [BR:
vrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
44547418_00651 (cshA_1)
Ribosome biogenesis [BR:
vrm03009
]
Prokaryotic type
rRNA helicases
44547418_00651 (cshA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
SNV61197
UniProt:
A0A239YQZ8
LinkDB
All DBs
Position
1:complement(731961..733259)
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AA seq
432 aa
AA seq
DB search
MKSFKSLGVCDELITALQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPI
LQRVHTDIHQEQVLIIAPTRELVKQLSDEAKLIGSVLNVDILPLIGGKTIESQLQQLGRR
PQVILGTPGRLLDHANRGSLHLNSIRRIVLDEADQMLHMGFLPDIEKLIGETDANRQLLL
FSATIPDKIRNLAKAYMSKPVSVTAEGKHITLDAIDQRVYMMNPEEKTNRLIQMIEQDNP
FLAIVFCNKREGAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIA
ARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPQDEPWLRRIERAIQ
ATLTKYTKDGQIKTKGNAGVAPKRGKTVAKPKITSTYQSTKAKAHKARGHKGSNTRQRRT
SSSQTGRRGKRR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctttcaaatccctaggtgtctgtgatgaactcatcacggcactacagaaacaa
ggtataaaagaacctactcccatccaagaacaatcgattcctatcgtcttcaaaggcaat
gacattattgcaaaagctcaaacaggtacaggtaaaacattagcgtttctattaccgatt
ttacaacgtgtccacacagacatacatcaggagcaagttctcattattgcaccgacacga
gaactggtaaagcaactctccgatgaggctaaattaataggttctgtattaaacgtggat
attctcccacttatcggcggcaaaaccatcgagagtcaattacaacagctcggcagacgt
ccacaagttatcttaggtacacctggtcgtctattggaccacgctaatcgaggatctctc
catctaaactccatccgtcgtatcgtattggatgaagcggatcaaatgttacacatgggg
ttcttaccggatatagaaaaactgatcggagaaaccgacgcaaaccgtcaactgctgctc
ttctccgctaccattccggataaaatcagaaacttagctaaagcatacatgtcaaaaccc
gtatcggtaacggcagaaggtaaacatattacattagatgccatcgaccagcgagtgtac
atgatgaatcctgaagagaaaacaaaccggctcattcagatgattgaacaggataatcct
tttctagcgattgtcttctgtaataaacgggaaggtgctgttcgactttcatatgaatta
accgccgctggtcttaatattgctgaaatgcatggtgatttaacacaaggacggcgcact
cagattttgagagacttcgcaaaagcaaaaacacaaattctggtcgcaacggatatcgcc
gcacgcggcatcgatatcgaagggattacccatgtatacaattacgatgtacctcatgat
gtggactattatatccaccgtatcggccgtaccggacgcgccgggaattccggcatagcc
gttacctttgctacaccacaagatgaaccttggttacgccgtattgaacgggctattcag
gcaacccttaccaaatatactaaagacgggcagataaaaactaaaggaaatgccggagtc
gcacctaaacgaggtaaaactgtagcaaaacctaaaattaccagcacctaccagtctaca
aaagcaaaagcacacaaagctagaggtcacaagggttctaacacgcggcaacgacgtaca
tctagcagtcaaacaggacgtcgcggcaaacgaagataa
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