Veillonella rodentium: 44547418_00987
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Entry
44547418_00987 CDS
T05216
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vrm
Veillonella rodentium
Brite
KEGG Orthology (KO) [BR:
vrm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vrm03032
]
44547418_00987 (topA)
03400 DNA repair and recombination proteins [BR:
vrm03400
]
44547418_00987 (topA)
Enzymes [BR:
vrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
44547418_00987 (topA)
DNA replication proteins [BR:
vrm03032
]
Prokaryotic type
DNA Topoisomerases
44547418_00987 (topA)
DNA repair and recombination proteins [BR:
vrm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
44547418_00987 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Motif
Other DBs
NCBI-ProteinID:
SNV65598
UniProt:
A0A239Z500
LinkDB
All DBs
Position
1:complement(1075162..1077489)
Genome browser
AA seq
775 aa
AA seq
DB search
MSIKRSIVIGEPKTAGASTEKKKKEKTKSTGTTITGKIGKETLKPVGIVRDKSVLQTSMP
PEQREPRVYNPEGKVLVIVESPAKSKTIEKFLGPNYVVKASMGHLRDLPKSQMGIDIEHG
FTPRYSNLVSRKKVIDELISYADDSSAVLLATDPDREGEAISWHLAYILNVDPTSTCRIT
FNEITKSAVADALNAPRTIDMNMVDAQQARRVLDRIVGYKLSPLLWKKICKGLSAGRVQS
VAVRLICEREREIQAFVPQEYWSIEGNFETSKKESFKAELTHIKGEKIDITAEDQAQSVV
DAIGDADAVVTNIEKRKRSRKAAPPFTTSTLQQDGVRKLNFGAKRTMMIAQHLYEGLEIG
SYGHVGLITYMRTDSTRISKEMQVAAKDYIIRTYGDEYYPSRPNVYGSKGSAQDAHEAIR
PTSLELTPKMVEPFLSRDELKLYTLIWNRFMASQMAPQQNESTTVELSVHDEYTFKATGT
RVLFPGFSVVYEDSKKDESPQLPAFKKNDAVHTVEVLPEQHFTQPPPRYSEASLIKTLEE
LGIGRPSTYAPILDTIVSRNYVENTNKQFVPTELGFVVVDFLIAYFEKIINTGFTRDLEE
ELDAIASGKDTYLKVLTDFYKVFAKELEEANDVERVEIASMESDETCEVCGSPMVYKFGR
YGKFLACSNFPECKNTKPITVRTGVTCPKCKEGEIVERKSRRGRLFYGCNRYPQCDFTLW
DKPTHDFCDTCGSIMVEKTYKNGTTKKFCSNESCPTRPPKKTRKKKSEPVAEESK
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
ttgtccattaaacgatcaatcgttattggcgagcctaaaacagctggcgcaagtacagag
aaaaagaagaaagagaaaactaaaagcacaggtactaccataacaggaaaaattggcaag
gaaacactgaaacctgttggaattgtacgggataagtccgtattacaaacatcgatgccc
cctgaacagcgtgaacctcgtgtatataatcctgaaggtaaagttctggttatcgtggaa
tcacctgctaagtctaaaaccattgagaaatttttaggacctaattatgtggtaaaagca
agtatgggtcatttacgggatttgcctaaatcgcagatggggatcgatatcgaacatggc
tttacacctcggtatagtaatttggtgagtcgaaaaaaggtcattgatgagcttatatct
tatgccgatgacagcagcgctgttttattggcgactgacccggaccgtgaaggtgaagcc
atttcttggcatttagcatacattttaaatgtggaccctacgtctacgtgtcgtatcaca
tttaatgagattactaaatccgctgtagcggatgcgcttaatgcgccgcgtactatcgac
atgaatatggtggacgctcagcaggcgagacgcgtattggaccgtattgtggggtataaa
ttaagcccccttttatggaaaaagatatgtaaaggtctcagcgccggtcgcgtacagtcc
gtagcggtacgtcttatttgcgagcgggaacgtgagattcaagcctttgttccgcaggag
tactggagtattgaaggtaattttgaaacttcaaagaaagagtcttttaaagcagagtta
acacatattaaaggtgagaaaatcgatatcaccgctgaagatcaagcacaatccgtggtt
gatgctatcggcgatgctgatgcggtggtaacgaatatcgagaaacgtaagcgctctcgt
aaagcggcacctccgttcacgacatccacattacaacaggatggtgtgcgtaagttgaat
tttggtgctaagcggaccatgatgattgcgcagcatctttatgaaggtttggaaatcggc
tcatacggccatgtaggtctgatcacttatatgcgtacggattctacgcgtatttccaag
gaaatgcaggtggcggcgaaggactatattattcgtacatatggtgatgaatattatcca
tcccgacctaatgtatacggttcaaaaggttcggctcaggatgcgcatgaggcgattcgt
ccgacctctctcgagttgacacctaaaatggtggaaccgtttttaagtcgcgatgaactc
aagttatatacattaatctggaatcgattcatggcaagccaaatggcaccgcagcagaat
gagtcgacaacggttgaactttcagttcatgatgaatatacatttaaagcgacgggaacc
cgtgtattgttccccgggttcagtgtcgtttatgaagactctaaaaaagatgagtctcca
caattgccggcatttaagaagaatgatgcggttcataccgttgaagtattgccggagcag
catttcacacagccgcctccacgatattcggaagcgagcctcatcaaaactttggaagaa
ctcggcatcggtcgtcctagcacctatgctccgattctggatacgattgtgagccgcaac
tatgtggagaatacaaacaagcagtttgttccgacagagctgggttttgtcgtggtagac
tttttaattgcctattttgaaaaaatcatcaataccggatttacccgtgatttggaagaa
gagcttgacgccatcgcatccggaaaagatacgtatctgaaggtattaacggatttttat
aaggtttttgcaaaagaattagaggaagccaatgatgtggagcgtgttgaaatcgcatct
atggagagtgatgaaacatgtgaagtctgcggtagtcctatggtttataaattcggacgt
tacggtaaatttttagcatgctctaatttccctgagtgcaagaatacaaaaccaatcacc
gtaagaaccggtgtaacctgtcctaagtgtaaggaaggggaaatcgtagaacgcaagtct
cgcagaggtcgtttgttctatggctgtaatcgatatccacaatgtgattttacattgtgg
gataaaccgacacatgacttctgtgatacatgcggatcgattatggtcgaaaaaacgtat
aagaacggaacgacaaagaaattctgctctaatgagtcatgtcctacacgtccgcctaag
aaaactagaaagaaaaaaagtgagcccgttgctgaggagtctaaataa
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