Veillonella rodentium: 44547418_01011
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Entry
44547418_01011 CDS
T05216
Symbol
pcrA_1
Name
(GenBank) ATP-dependent DNA helicase pcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vrm
Veillonella rodentium
Pathway
vrm03420
Nucleotide excision repair
vrm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
44547418_01011 (pcrA_1)
03430 Mismatch repair
44547418_01011 (pcrA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vrm03400
]
44547418_01011 (pcrA_1)
Enzymes [BR:
vrm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
44547418_01011 (pcrA_1)
DNA repair and recombination proteins [BR:
vrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
44547418_01011 (pcrA_1)
MMR (mismatch excision repair)
Other MMR factors
44547418_01011 (pcrA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_11
AAA_14
DEAD
ResIII
DUF3226
DUF3553
Motif
Other DBs
NCBI-ProteinID:
SNV65871
UniProt:
A0A239Z386
LinkDB
All DBs
Position
1:complement(1102122..1104311)
Genome browser
AA seq
729 aa
AA seq
DB search
MNSLLTGLNKEQQKAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFT
NKAAKEMKSRVEGLVGDVANRIWLSTFHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQVV
VKAALKALNLDDKYYPVGAMIAAISDAKNKLQFASDYRKQARDFYQQKVADVYEYYEKEL
RKNNALDFDDLLLVAVKLLQTNAAVLDKYSKRFRYVMIDEYQDTNHAQYLLAYLLSSRWK
NIAVVGDADQSIYAWRGADIQNILDFEKDYPNCTSIKLEQNYRSTKIILDAANAVIDNNE
GRPEKNLWTDKVDGLKIQHFTAQSEHEEAAFIGDTITKKHDVHGVPYGDMAILYRTNAQS
RVLEEALIKRALPYTMVGGTKFYDRKEIKDVLAYLRVLYNPFDDLSLLRIINVPKRSIGA
TTVSKLQEYARANGTSLFMTLTQLHLVDSIKGKTKEKLEEFGILIFTLVAEMDDKSVLEI
LESILDRTGYLEQLEESTDPQDQARAENIGELLSVAKDFQDTNPTGTVEDFLEQVALVND
VDSFEQEESKVTLMTLHAAKGLEFPIVFLCGLEEGLFPHSRTLMNPEEIEEERRLAYVGI
TRAEKELFISNATTRTVFGRTSSYLPSRFIDEIPEELVDSLRAKRKVPDDIKRQVPQHMS
VTSRPVTKPIVRNEVIADWKIGDTAIHSKWGNGKVIGVAGEGAGMKLTIEFPTQGVRVVM
AKFAPVKKG
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgttattaacaggtttgaataaagaacaacaaaaagcggtacaacatacggaa
ggccctttattgattcttgcaggtgccggatcgggtaaaacaaaggtgttgacggttcga
attgctcacctattggcacaaggtgtcaatccttacgaaattttggccatcactttcact
aataaggcggctaaggaaatgaaaagccgtgtggaaggtcttgtaggtgacgtggctaat
cgtatctggctcagtacgtttcacagcttctgtgctaagtttttacgtttcgaattagat
aattttttaggttataacagtaattttacgatttacgatacatcggactctcaggttgtc
gttaaggccgcattgaaggcgttgaaccttgatgataaatattatcccgtgggggctatg
attgctgctatttcagatgcgaagaataaattacagttcgcatcggattatcgtaaacag
gcacgtgacttttaccagcaaaaggtagcggatgtatacgaatattatgagaaagaacta
cgcaagaataatgcattggattttgatgatttattgctcgtagctgttaaattattgcag
acaaatgcggcggttctcgataaatacagcaagcgttttcgatatgtcatgatcgacgaa
tatcaagatacgaaccatgctcagtacttgttggcgtatttattgtcttcgcgctggaaa
aatatcgccgtcgtaggtgatgctgaccagagtatctatgcatggcgcggggcggatatt
caaaatattctggatttcgaaaaggattatccgaactgtacatccataaaattggaacag
aattatcgatctactaaaattattctcgatgcggctaatgcggttatcgataataatgaa
ggacgacctgagaaaaatttgtggaccgataaggtggatggtcttaaaatccagcatttt
acggctcaatccgaacatgaagaggcggctttcatcggcgatacgatcactaaaaaacat
gatgttcatggtgtaccatatggagatatggcgattttatatcgtacaaatgctcagtcc
cgtgtacttgaagaagcgttgataaaacgggccttgccatatacgatggtgggggggaca
aagttctatgatcgcaaggaaattaaggatgtattagcctatttacgggttttatataat
cccttcgatgatctcagtctgttgcggattattaacgttccaaagcgaagtatcggggct
actacggtatctaagttgcaggaatatgctcgtgctaacgggacatctctatttatgaca
ttgacccaattacacctggttgattctatcaagggtaagacaaaagaaaagctggaagaa
ttcggtattctaattttcacgttggtcgctgaaatggatgataaatctgttttagaaatt
ttagaatctattttagacaggacagggtatcttgaacaattagaagaaagtacggatccg
caggatcaggcgcgtgctgaaaatatcggtgaactgttgtctgtggcaaaagattttcag
gatacaaatcccacaggtacagtagaagatttcttggagcaggtggcacttgtaaatgat
gtggattcttttgaacaggaagagtcgaaggttaccttgatgacattgcatgctgctaaa
ggtctggaatttcccatcgtatttttgtgtggcttagaagaaggattatttcctcatagc
cggacattgatgaatcctgaggaaattgaagaggagcgtcgtcttgcttatgtgggaatt
acgcgagcggagaaagagctatttatttctaatgcaacgacgcgcaccgtattcggccgt
acaagcagttatttaccgtcccgttttattgatgagattccggaggaattagtcgattcg
ttacgagctaaacgaaaggtacctgacgatattaagcgtcaggtgcctcagcatatgagc
gtcaccagccgccctgtaacaaaaccgattgttcgaaatgaagtcattgccgactggaag
attggtgataccgcaattcacagcaagtgggggaacggtaaggttatcggtgttgccgga
gagggggccggtatgaaattgaccatcgagtttccgacgcaaggggtgcgcgtggtaatg
gcgaagttcgcaccagtgaaaaaaggataa
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