Veillonella rodentium: 44547418_01295
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Entry
44547418_01295 CDS
T05216
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vrm
Veillonella rodentium
Pathway
vrm03410
Base excision repair
vrm03430
Mismatch repair
vrm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
44547418_01295 (recJ)
03430 Mismatch repair
44547418_01295 (recJ)
03440 Homologous recombination
44547418_01295 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vrm03400
]
44547418_01295 (recJ)
DNA repair and recombination proteins [BR:
vrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
44547418_01295 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
44547418_01295 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
44547418_01295 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
SBB_T7
PhoU
Motif
Other DBs
NCBI-ProteinID:
SNV69434
UniProt:
A0A239ZFH9
LinkDB
All DBs
Position
1:complement(1386348..1388330)
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AA seq
660 aa
AA seq
DB search
MIRKKRWRLSSGDTEQENILIRELGVNPIVAKLMVNRHIDVNEGRRFLTGNLSDLLEPFT
LKDMDIAVSLIQKTLESNKSIVIYGDYDVDGITATSLLYRFFQRLHANVSYYIPERQSEG
YGLNLEALEHLVEQGTALVITVDCGISSYDIVEAVRDRLDIIITDHHTAPDRIPRAKAVI
NHKQKDCPYTDKNLSGVGVAFKLCQALWLTKYGEWYLDDLDIVALGTVADVVPLVGENRV
IVKAGLEKMNEHPNLGIHKLIDVSGLHEKNITSGHIGFTLAPRLNAAGRVTHATRAVELL
VTDDSDVAEAIAEELNETNRERQELERNIYEQARIDVLNQGHEADYVTVVAGKEWHPGVI
GIVASRLVEEFYKPTLVISIHDGVGKGSCRSIDGFNIYDALKSCEDILIQFGGHAAAAGF
SIDANRIDELRSRLTEYCKRTIDDEEYVPVVFIDAELPVDDIDVDIIDSISALEPYGMAN
STPVFAVMEAVVQDIMLMGQLKTHCKVILETSRGTLDAIAWNRPELFKLIFVGTKVKVAF
SLQKNEWQGTVSPQLMIQDIEPITEEPISLTAEGLRQIYVIVKHSMRGNSQSVYHVEQAI
LRRKPTEQNNRSALASLDVFKELGIVKEYTSDDGQLMLRWNTVEGKLDLVTSVTFLTYSR
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgattagaaagaagcgttggagactctcgtcgggggatacagaacaagagaatatctta
atccgtgaacttggtgtaaatcctatcgtcgcaaagttaatggtgaatcgtcacatcgat
gtcaatgaaggacgccgttttttaacgggtaatttatccgatttgcttgagccgtttaca
ttgaaggatatggatatcgccgtttcgttgattcagaagacgctagagagcaataagtcc
atcgtgatttatggtgattacgatgtggacggtattacagcgacatctttgttatatcgt
ttttttcagcgtttacatgccaatgtgagttattatataccggagcgacaaagtgaaggt
tacggtttaaatttagaggctcttgagcatcttgtggagcagggaacggcgcttgttatc
accgttgactgcggtatcagctcatatgatatcgtggaggccgttcgggatcggcttgat
ataattattacagatcatcatacggcgccggatagaatcccccgtgccaaggcggtgatt
aatcataagcagaaggattgcccttatacggataagaatttatccggcgtaggtgtggct
tttaaactatgtcaggccttatggctcacgaagtatggcgaatggtatctggatgatctc
gatatcgtggctctgggaactgttgctgatgtggtgcctcttgtcggggaaaatcgggtc
atcgtgaaagctggccttgagaagatgaatgagcatcctaatctgggcattcataaactc
attgatgtgtcgggtttgcatgaaaaaaatatcacatccggtcatatcggttttacgttg
gcaccgcgtttaaatgcggcgggacgtgtcacacacgccacccgcgccgtagaattattg
gtgactgatgatagtgacgtggccgaagcgattgcagaggaattaaatgagacgaatcgg
gaacggcaagagttggagcgtaatatttatgaacaggctcgcatcgacgtgttgaatcaa
ggtcatgaggcggattatgtaaccgtcgtagccggtaaagagtggcatccgggcgtaata
ggaattgtggcgtcccgattagtggaggaattttataagcctacattggtcatcagtatt
catgacggagtagggaaaggatcttgtcgcagtattgacggttttaatatttatgatgcg
ttgaaatcctgcgaggatatactgattcagttcggcggtcatgcggctgcggcggggttc
agcattgatgcgaatcgcatagatgaactgcgcagtcgtctgacggagtactgtaagcgt
acgatagatgatgaagaatatgtaccggttgtcttcattgatgcggaactgcctgtggat
gacatcgatgtggatattatagacagtatatccgcgttagaaccgtacggaatggcaaac
agcacacctgtttttgccgttatggaagccgttgtacaggatattatgcttatggggcag
ctgaagactcactgcaaggtgattttagagacctccaggggtactttggatgcaattgct
tggaatcgacctgaattatttaaattgatatttgtagggacaaaggtgaaagtagccttt
tcattgcagaaaaatgaatggcaaggtaccgtgtccccgcaacttatgattcaggatata
gaaccgatcacggaggaacctatcagcctgaccgcagaaggcctgcgtcagatatacgtt
atcgtgaaacattccatgcgcgggaacagccaatctgtttatcatgtggaacaggctatt
ttacgccgtaagccgacagaacagaataatcgcagtgccttggcctctttagatgtattt
aaagagctcggtattgttaaggaatatacaagtgatgatggtcaacttatgttgcgatgg
aataccgtcgaaggaaaattagatcttgtcacatccgtaacatttctcacctatagtaga
tag
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