Veillonella rodentium: 44547418_01595
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Entry
44547418_01595 CDS
T05216
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vrm
Veillonella rodentium
Pathway
vrm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vrm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
44547418_01595 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vrm03021
]
44547418_01595 (rpoC)
03400 DNA repair and recombination proteins [BR:
vrm03400
]
44547418_01595 (rpoC)
Enzymes [BR:
vrm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
44547418_01595 (rpoC)
Transcription machinery [BR:
vrm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
44547418_01595 (rpoC)
DNA repair and recombination proteins [BR:
vrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
44547418_01595 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
SHOCT
Motif
Other DBs
NCBI-ProteinID:
SNV73178
UniProt:
A0A239ZQV0
LinkDB
All DBs
Position
1:complement(1683292..1687494)
Genome browser
AA seq
1400 aa
AA seq
DB search
MLDVNEFDSMRIGLASPEQILAWSHGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC
HCGKYKRIRHKGVVCDKCGVEVTRAKVRRERMGHIELATPVSHIWYFKGIPSRMGLILDV
SPRSLERVLYFASYIVVDPAGTPLAKRQLLSEQEYREYEAQFNEDGYTIGGKSVVIETVA
QRNERLAIVREAQRKERYNAALRDDATIPEADKEYEELTREERYELGASEEILFACIDMG
AEAVKALLAELDLEVLNAELREELNTASGQRKIRAVRRLEVVEAFRQSGNRPEWMIMDVV
PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEA
VDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELK
MHQCGLPKEMALELFKPFVMKRLVERGQASNIKAAKRQVERIGPGVWESLEEVIKEHPVL
LNRAPTLHRLGIQAFEPILWEGRAIKLHPLVCTAFNADFDGDQMACHLPLSVEAQAEART
LMLSSHNILSTKDGKPVAVPSQDMILGTYYLTVVREDTKDKAKTFATYDEVMLAYESHVI
GLQDILYIRMPEHGRVETTAGRLIFNNALFPELWQYEQREDGTYSLGKVMDKKTVGKLVD
QCFQLFGNEKTAELLDRIKSLGYSFARRAGMTVAIADIKVPDVKFDLLDTAEQEVEKVSR
LYRRGLITEEERYRKTIQLWTQATEDVTDAMMDNMACDKDGFNPVYMMAISGARGNKQQI
RQLAGMRGLMADPSGRIIDLPIKANFKEGLTVLDYFTSSHGARKGLADTALRTADSGYLT
RRLVDVSQDVIVREDDCDVVGIDLVRERARLATSSRQALDLLKDKLLGRVLDKDVVNAET
GELVVPAETVLDEQCLTDIAESGVTSIALRGVHLGSDSDINHTNLVQKIILGESDDSIRA
TLKETMVQNMLNKDTVNAIVDSDGVEIFPADTRLTEEGIEAILNSDVKEVQVRNNEIHGI
EVEAIVEGTGVIEPLKDRIVGRIAAEELVNKETGEVIVPLNGEITEALADEVVKHYETVK
IRSVLTCRSPYGVCRKCYGRDLGTGNQVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVA
GDDITQGLPRVEELFEARKPKRNAIIAENEGTVRVVPNEGKKGTNTIFITGEDGIELDYL
IPYGSRIIVKDGDVVSLGARLTEGSINPHDIMRVMGTEATQRYLVYEVQKVYKSQGVEIN
DKHIEVIVRQMLHKVKIETAGDADMLPGDMVDVNTFDEENRRLTLNGRENATGKRTLLGI
TKAALATDSFLSAASFQETTRVLTDAAIKGKIDPLLGLKENVIIGKLIPAGTGMSRYRKI
EVVKNTPEIIDITEEVMSED
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtaaatgaattcgattccatgcgaatcggcttagcctctccggaacagatc
ttggcatggtctcatggggaagttaagaaaccagaaacaattaactaccgtacgttaaag
ccggaacgtgatggcctgttctgtgaacgcatttttggacctacaaaggattgggaatgt
cactgcggcaaatataaacgtatccgtcataaaggcgtagtctgcgataaatgtggtgtt
gaagttactcgtgcaaaagtacgtcgtgaacgtatgggtcatattgaattggccactcct
gtatctcacatctggtactttaaaggtattccgtcccgtatgggcctgatccttgatgta
tctccacgttctttggaacgtgtattatactttgcttcttatatcgtagtagatcctgct
ggaacaccgttggcgaaacgccaattgttatccgagcaggaatatcgtgaatatgaagct
caatttaacgaagacggttatactatcggtggtaaatccgtcgttattgaaacggtggcg
caacgcaacgaacgtttggccatcgtgcgtgaagcacaacgcaaagaacgctataatgcg
gctcttcgcgatgatgcgacgattccggaagccgacaaagaatacgaggaactcactcgt
gaagaacgctatgaattaggcgcttccgaagaaattcttttcgcctgcatcgatatgggg
gctgaggcggtaaaagcgcttttagctgaactcgatttagaagtattgaatgctgaattg
cgtgaagaattgaacacggccagcggtcagcgtaaaattcgtgcggttcgccgtttagag
gttgtagaagcattccgtcagtccggtaaccgccctgaatggatgattatggatgtggtt
cctgtaattccacctgaattgcgccctatggttcagctcgatggcggtcgttttgccaca
tctgacctcaatgatttatatcgccgtgtcatcaatcgtaacaaccgtttgaaacgattg
ctcgatttgggggcacctgacatcatcgtacgcaacgaaaaacgcatgcttcaggaagcg
gtggatgcgttaatcgataatggccgtcgcggtcgtcctgttacgggacctggtaaccgt
ccgttgaaatccttgtccgatatgctcaagggtaaacaaggtcgtttccgtcagaacctg
ctcggtaaacgtgttgactactccggtcgttccgttatcgtagtaggccctgaacttaaa
atgcatcaatgcggcctgcctaaggaaatggcgttggaattgttcaaaccgttcgttatg
aaacgtctggttgaacgcggtcaggcatccaatatcaaggctgctaaacgtcaagttgaa
agaatcggtcccggcgtgtgggagtccttggaagaggttatcaaggaacatcctgttctc
ttgaaccgcgcccctacattgcacagacttggtatccaggctttcgaaccgattctttgg
gaaggccgtgccatcaagttgcatccattagtatgtacagcgttcaacgccgactttgac
ggtgaccaaatggcgtgtcacttgccattgtccgttgaagcacaggcggaagcacgtaca
ttgatgctttccagccataatatcttgtctacgaaggacggtaaaccggtagcggtaccg
tctcaggatatgatcttgggtacatactacttgacggttgtacgtgaagatactaaagac
aaggcaaaaacatttgctacttatgatgaagttatgcttgcctatgaatctcatgtcatc
ggattgcaggatattctctatatccgcatgcctgaacatggtcgcgtggaaaccactgct
ggtcgcctgatcttcaataacgcgttattccctgaattatggcaatatgaacaacgtgaa
gacggtacttattctttgggtaaggttatggataagaaaaccgtcggcaaattggttgat
caatgcttccagttgttcggtaacgaaaaaacggcggaattattggatagaatcaagtcc
ttgggctattctttcgcacgtcgcgccggcatgaccgtagcgattgcggatatcaaggta
ccggatgtcaagtttgatttacttgatacggcggaacaagaggtagaaaaagtatcccgc
ttgtaccggcgcggtctcattacagaggaagaacggtatcgtaagactattcagttgtgg
actcaggcgacagaagatgttaccgatgccatgatggataatatggcctgcgataaagac
ggctttaaccctgtatatatgatggctatctccggtgcccgcggtaataaacaacagatt
cgtcagcttgccggtatgcgcggtttgatggcggatccgtccggtcgtatcatcgacttg
ccgattaaggcgaactttaaagaaggcttgaccgtattggattactttacatcctcccac
ggtgcccgtaaaggcttggccgatacggcgcttcgtacagctgactccggttacttgacc
cgtcgtcttgttgacgtatctcaggatgtaatcgttcgtgaggatgattgtgatgtggta
ggtatcgacctcgttcgtgaacgggctcgtttggccacatcttcccgtcaggcgctggac
ttgttgaaagacaagcttctcggccgcgtgttggataaagacgtggttaatgcggaaaca
ggcgaacttgtggtgcctgctgaaaccgttcttgatgaacaatgtttgacggatattgct
gaatccggtgttacatcgatcgctttgcgcggtgtgcatttgggctccgacagcgatatc
aaccatactaacctggttcagaaaattattcttggtgaaagtgatgacagcatccgtgca
acattgaaggaaaccatggttcagaatatgttgaacaaggatactgtaaatgccatcgtc
gacagtgacggcgtggaaattttccctgccgatacacgccttacggaagaaggcatcgaa
gctattcttaactccgatgtaaaagaagtacaggtgcgcaacaatgaaatccacggtatc
gaagtggaagctatcgttgaaggtaccggtgttatcgaaccgttaaaagaccgtatcgta
ggccgcattgcagccgaagaattggttaacaaggaaactggcgaggttatcgttcctctt
aacggtgaaattacggaagcattggctgatgaagtagtaaaacactatgaaaccgttaag
atccgttccgtattgacctgccgcagcccttatggcgtatgccgcaagtgctacggtcgc
gatttaggtacgggtaaccaggttcaagtcggtgaagccgtaggtatcattgcagcacaa
tccatcggtgaaccgggtactcagttgacaatgcgtacattccatacaggcggtgtcgca
ggtgacgatatcacacaaggtttgccgcgtgtcgaagaattgttcgaagcgcgtaagccg
aaacgtaatgccattatcgccgaaaacgaagggactgttcgcgttgtgcctaacgaaggt
aaaaaaggcaccaatacaatcttcatcaccggtgaagacggtatcgaacttgattatctc
atcccttacggttcccgcattatcgttaaagacggtgatgtggtatccttgggcgcccgt
ttgacagaaggctccatcaatcctcatgacatcatgcgtgtcatgggtacggaagcgaca
caacgttatctcgtatatgaagtgcagaaagtatacaaatcccaaggtgtagaaattaac
gataaacatatcgaagttatcgtacgccaaatgcttcataaagttaaaatcgaaactgcc
ggcgatgccgatatgcttcctggggatatggtcgacgttaatacttttgacgaagaaaat
cgtcgtcttactcttaacggtcgtgaaaatgctacaggcaagcgcacgttgttgggtatt
acaaaagccgcattggctacggattccttcttgtccgctgcgtcattccaggaaacgaca
cgtgttcttaccgacgctgccatcaagggtaaaatcgatccattgttgggcttgaaagaa
aacgtaattatcggtaagttaattcctgccggtacaggtatgagtcgttaccgtaagatt
gaagttgtaaaaaatacacctgaaatcattgatattacggaagaggttatgtctgaagat
taa
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