Veillonella rodentium: 44547418_01785
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Entry
44547418_01785 CDS
T05216
Symbol
rnjA
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
vrm
Veillonella rodentium
Pathway
vrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
44547418_01785 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vrm03019
]
44547418_01785 (rnjA)
Messenger RNA biogenesis [BR:
vrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
44547418_01785 (rnjA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
SNV75177
UniProt:
A0A239ZVY9
LinkDB
All DBs
Position
1:complement(1910246..1912354)
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AA seq
702 aa
AA seq
DB search
MNTTENQVAAQVTAEPVAHTAPATGEQKQPRRRTTTRRPAGEGRTNHDGENTSRPRRNAN
NRTNTNGGTAATRRTNTRRNAESDEGTERKPRQTRAPRGEHGENTRNTRTNRTRNGQNQN
RSERTNRSTNRNSHHDQGEQVELIGRTPNGANKGKFQIIPLGGLGEIGKNMTVFQYEDEI
IVLDSGLAFPSEDMLGVDIVIPDMSYIIENKDRVKAVVITHGHEDHIGSLAYLMKEISCP
VYATNLVCGLIEGKFKEHKVSPKCLRTIAAGDEVQIGQVKVGFIQTNHSIPDSCAVYFDT
PIGTVLHTGDFKIDQTPVDGRLMDMHKFAELGNKGVLALLSDSTNVEKPGTTGSESSVGP
AIKQAVGEAKGRVVLATFASNVSRIQQAIDAAVFYKRKVVIMGRSMVNVTEIAQERGYLN
VPPNTIIDVDVMHNYTDDQIMILTTGSQGEPMAGLSRMATSNHRTVELAPNDTVIISATP
IPGNEGAVGRTIDNLLRLGCNVVYGKDRGIHVSGHASQEELKTMLNLVRPEYFIPVHGEY
RMLRRHGELGVAMGVDPKKVLIGDNGQIFEFDKNGGRKGGRVQAGAIFVDGLGVGDVGNI
VIRDRQQLAQEGMVIVVMAMDKASGTIVAGPDLVSRGFVYVRDAEELMLAAERRVDQVLE
DCELQRIKDWTTIKQNVRDALGKFFYDKTRRRPMILPIIQDV
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgaatacaacagaaaatcaggttgctgcacaagtgactgcagaaccagttgcgcatacg
gcaccggctacgggtgaacaaaaacaaccgcgtcgccgcactactacacgtcgtccggcc
ggtgaaggtcgcacgaatcatgacggtgagaatacaagccgtccacgccgtaatgcaaat
aatcgtacgaacaccaatggcggcaccgctgcgactcgtcgtacaaatacgcgtcgtaat
gctgaatccgatgaaggtacggaacgtaaaccgcgtcaaactcgtgctccgcgcggcgaa
catggtgaaaatacgcgcaatacgcgcactaatcgcacgagaaacggtcaaaatcagaac
cgttccgagcggacgaatcgctctacaaatcgcaacagtcaccatgatcaaggtgaacag
gttgaactaatcggccgtacaccaaatggcgcgaacaagggaaaattccagattatcccg
cttggcggccttggtgaaatcggtaaaaatatgaccgtgttccaatatgaggacgaaatt
atcgttcttgactccggtcttgcgttccctagcgaagacatgcttggcgtagatattgtt
attcctgacatgagctatatcatcgagaataaggatcgcgtgaaggccgtcgttattacg
catgggcacgaggaccatatcggctccctggcataccttatgaaggaaatcagctgccct
gtatatgcgacaaatctcgtttgcggtttaatcgaaggcaagtttaaagagcataaggta
tctccgaaatgtctccgcacgattgcggccggcgatgaggttcagattggtcaggtgaaa
gtcggttttatccaaaccaatcactccatccctgattcctgcgctgtatattttgatacg
ccgatcgggacggtccttcatacaggggactttaaaatcgaccagactccggttgacgga
cggttgatggatatgcacaagttcgctgaactcggcaataaaggcgtactagctttgtta
tcggactctacaaacgtagaaaaaccgggtactaccggttctgaaagttccgtaggacct
gcgattaaacaggccgtcggtgaagcgaagggtcgtgtcgtattggcgactttcgcatcc
aacgtatcccgtattcaacaagccatcgatgcagccgttttctacaaacgtaaggttgta
attatgggccgcagcatggtgaacgtaacggaaattgcacaagaacgcggttacttgaat
gtaccgccaaatacgattatcgatgtagatgtaatgcacaattacacggatgatcaaatc
atgattttgactaccggttctcaaggtgaaccgatggccggcttgtcccgtatggcgaca
agcaatcaccgtaccgtagaactggcgccgaatgataccgttatcatctccgctacgccg
attcccggtaatgaaggtgctgtaggcagaacgattgataacttgctccgtttgggctgt
aatgtggtatacggtaaagaccgcggtattcatgtatccggtcatgcgagtcaggaagaa
ctcaaaacgatgctcaacctggtccgtccggaatactttattccggttcatggcgaatac
cgcatgttgcgccgccatggtgaactcggtgtggctatgggcgtagaccctaaaaaggtt
ctcatcggcgacaacggtcagatttttgaatttgataaaaatggtggccgtaagggtggc
cgcgtacaagccggtgctatcttcgttgatggccttggcgttggcgatgtggggaatatc
gttatccgcgaccgtcaacaattggctcaggaaggcatggttatcgtagttatggctatg
gataaagcatcgggtaccatcgtagccggtccggacctcgtgtctcgcggcttcgtatac
gtacgtgatgcggaagaactcatgcttgcggcggaacgtcgcgtcgaccaggttcttgaa
gactgcgaattacagcgcatcaaagactggacaaccattaaacaaaacgtgcgcgatgca
ttgggtaaatttttctatgataagacccgtcgtcgtcctatgatcttgccgattattcaa
gatgtatag
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