Vibrio rotiferianus: BSZ04_01220
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Entry
BSZ04_01220 CDS
T05115
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vro
Vibrio rotiferianus
Pathway
vro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSZ04_01220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vro03019
]
BSZ04_01220
03009 Ribosome biogenesis [BR:
vro03009
]
BSZ04_01220
Enzymes [BR:
vro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSZ04_01220
Messenger RNA biogenesis [BR:
vro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSZ04_01220
Ribosome biogenesis [BR:
vro03009
]
Prokaryotic type
rRNA helicases
BSZ04_01220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
WSD
Motif
Other DBs
NCBI-ProteinID:
ASI93674
LinkDB
All DBs
Position
1:complement(232380..234299)
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AA seq
639 aa
AA seq
DB search
MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAF
SLPLLNKLDLNQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMR
ALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPAM
LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGRDGGRNFNNQDWDTYQLQV
GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSDAANKLSKLRIRQQ
DVGAVVCDFDDFRESRGGRRDGGRRDGGRRDGGGYRGNRDGNREGGRREGGRREGGFRGN
RDGNREGGERRFDRNRGGDHRGAHRGERGHSRGRRTQDA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgttattcaattcagcgatttatctctgaatgattctatcctttctgct
ctagacggaatgggtttcgtgtcaccaactccaattcaggctgcggcaatcccacaccta
ttggaaggtgctgacgcgctgggtaaagcacagacgggtacaggtaaaacggcagcattc
tctctgcctcttctaaacaaactagatctaaaccaacgtaaaccacaagcaatcgttctt
gctccaactcgtgagctagcgattcaggttgcggctgagatgaagaaccttggtaaaaac
atcaagggtcttaaagttctagaaatctacggtggtgcatctatcgtagatcaaatgcgt
gctcttaaaaatggtgcacacgttgttgttggtactcctggccgtgttcaagaccttatc
aaccgtgaacgtctacatctagacgaagttaatactttcgtacttgatgaagcggacgaa
atgctaaacatgggtttcgtggacgacgtaactgctatcatggagcacgctcctgagtca
gctcaacgcgttctgttctctgcaactatgccaccaatgctgaaaaacattgttgagcgc
ttcctacgtgatcctgtcactgttgacgttgctggtaaaaaccacactgtagacaaagtt
caacaacagttctgggtagtgaagggtgtagagaaagatgaagctatgtctcgtcttctt
gaaactgaagaaactgacgcgtcaatcgtattcgtacgtactcgtcaagacactgagcgt
ctagctgattggctatctgcacgtggctttaaagctgcagcactgcacggtgatattcct
cagtctctacgtgagcgtactgttgatcacatcaaacaaggtgttatcgacatcctagtt
gcaactgacgttgttgctcgtggcctagacgttccacgtattactcacgtatttaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggtcgtactggccgtgcagga
cgtaaaggtaaagcgatccttctagttcgtactaaccaaatccgtatgcttcgcactatc
gagcgtgtaactaagtcatctatggaagaaatccaacttcctctacgtgaccaagttgca
gaagctcgtctaaacaagctagcggctgaactggaagcagagaaagaacacaaagcacta
gacaagttcgctgagcttgtagagaaactacaaacttctctagaaatcgatccagcgatg
cttgctgcaatgcttcttaagcgtcagcaaggtaaacgtcctctattctacattggcgaa
gacccaatggtagaagcaattgaacgtgacaagcaacgtcgtaaagagcgccgtgaaggt
ggtcgtgacggcggtcgtaacttcaacaaccaagactgggatacttaccagcttcaagtt
ggtcgcgagcaaggcgttcaagttaaagacatcgttggcgctctagcaaacgaactaggt
ctaggcaaaggttctatcggtgcgatcaagctagcgcaaggtcacacattcgtacagcta
cctaaagcaatgacttcagacgctgcgaacaagctaagcaaactacgtatccgtcaacaa
gatgttggtgctgtagtatgtgacttcgatgacttccgtgagtctcgtggtggtcgccgt
gacggtggtcgtcgcgatggtggtcgtcgtgatggcggtggttaccgtggtaaccgcgat
ggcaaccgtgaaggtggtcgtcgtgaaggcggccgtcgcgaaggtggtttccgtggtaac
cgtgacggtaaccgtgaaggtggcgaacgtcgtttcgatcgcaaccgtggtggggatcac
cgtggtgcacaccgtggcgaacgtggtcacagccgtggccgtcgtacacaagacgcataa
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