Vibrio rotiferianus: BSZ04_06230
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Entry
BSZ04_06230 CDS
T05115
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vro
Vibrio rotiferianus
Pathway
vro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSZ04_06230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vro03019
]
BSZ04_06230
Enzymes [BR:
vro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSZ04_06230
Messenger RNA biogenesis [BR:
vro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSZ04_06230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ASI94602
LinkDB
All DBs
Position
1:complement(1332926..1334488)
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AA seq
520 aa
AA seq
DB search
MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL
ERLSNGPRVRSNQVRALVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRL
RKGADVLVATPGRLLDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILDLLPKQRQ
NLLFSATFSNEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKD
GDWKQVLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVAT
DIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFAIER
LIQQLLPRKELEGYAPTNLLPESKLDTRPIKPKKPKKPKKPKAEGENGQTAEKKNSGGNN
KPKRRFNSDNKNGKGENKSGKGGAGKPKGNRDGQARSNGKPSGSKPNANKPNASKNGNGG
KPSGNRKPNSGKPAGAKPSNGKPSGNKPSGQRRKPRPQTA
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacctcgttaggtctatctgctccaatccttaaagctattcaggaaaaaggc
tacgacaccccttcgccaattcaggcaaaagcaattccagctgttttggaagggaaagac
gtaatggcagcagcacagactggtacaggtaaaacggctggctttacgctgccgattctt
gaacgtctgtctaacggtccacgagtacgcagcaaccaagtccgcgcattggtgctaacg
ccaactcgtgagcttgcagctcaggtgcaagaaaacgtattcatgtacagccgtcaccta
cctctaacgagtgcagtggtatttggtggtgtgaagatcaatccgcaaatgcttcgcctt
cgtaaaggtgcggacgtattggttgcaacaccaggtcgtctattggacctatacaaccaa
aatgcagtgaagttcgaccaactagaaatgctggttctggacgaagcggaccgcatgcta
gacatgggttttattcgcgacattcgtaagatccttgacttgctaccgaagcaacgtcag
aacctgctgttctctgcgacgttctctaacgaaattcgcgaccttgcaaaaggtttggta
aacaaccctgtagagatttcagttaaccctgcaaactcgacagcacgcaccgtagaacaa
tgcatctacccagcagacgtgaagaagaaagcgccaatgttggtcaaactgatcaaagac
ggtgactggaaacaagtattggtatttaccaaaaccaagcatggcgcaaaccgcttagcc
aagttcctaatcgaccaaaagattacagcagctgcgattcatggtaacaagagccaaggt
gcacgtaccaaagcactggctgactttaaatctggtgaagttcgcgttctagttgccacc
gacattgctgctcgtggtatcgatattccacaacttcctcaagtggtgaacttcgagctg
ccgaaagtagcagaggactacgttcaccgtattggtcgtactggtcgtgctggtgaagtg
ggtaaagcgatttctctagtgtgcgcacttgaagcatcagagctgtttgcgattgaacgt
ttgattcaacagctgcttcctcgtaaagaactggaaggctacgcaccaactaacctattg
ccagagtcgaagcttgatactcgtcctatcaagccaaagaaaccgaaaaagcctaaaaag
ccaaaagcagaaggtgaaaacggtcaaaccgctgagaagaaaaacagcggcggtaacaac
aaaccaaagcgtcgtttcaacagcgacaacaaaaacggtaaaggcgaaaacaaatcaggc
aaaggcggcgctggtaaaccaaaaggtaaccgcgatggtcaagcgcgatccaacggcaag
ccaagcggtagcaagccgaatgcgaataagccaaacgcgagcaaaaacggtaacggtggt
aaaccgtcgggtaaccgtaagcctaacagcggcaaaccagcaggcgcaaagccttcaaac
ggtaaaccgtcaggcaacaagccatcagggcaacgtcgtaagcctcgtccgcaaactgcg
tag
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