Vibrio rotiferianus: BSZ04_07870
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Entry
BSZ04_07870 CDS
T05115
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vro
Vibrio rotiferianus
Brite
KEGG Orthology (KO) [BR:
vro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vro03400
]
BSZ04_07870
DNA repair and recombination proteins [BR:
vro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BSZ04_07870
Archaeal homologous recombinant proteins
BSZ04_07870
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_29
nSTAND_NTPase5
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ASI94920
LinkDB
All DBs
Position
1:1715689..1718745
Genome browser
AA seq
1018 aa
AA seq
DB search
MKPIKLTMQAFGPFAQTETIEFDKLGTNPLFLINGPTGSGKTSILDAICFALYGETTGNE
RQGIQMRCDMAAPTLLTEVTLEFSLHGKSYRVIRSPEQEAPKARGEGMTVRKHTAALYEI
TDEEKLITSKTTQVKTEVTNIIGLNETQFRQVMVLPQGKFRELLLATSKEREEIFGQLFQ
TDIYKKIEYALKDKASAISKAKDEFDNQIRGALQVAGVSSEVELTEQREALSVQFESVQK
QEQESLAQLNAVKTDLQKAEALSNEFKKREQAEIALKQHLEQSDAVSSRQLQLDNAKKAS
KVELPYVTLQNASKQTQELEQKVAKLSQDLTVANDAVKSKEGALQTAKEQAAQLPKLTEQ
QYQLEGMKGKLVEKSELEKAINAGLTQKSEFEATLKKYSALKEKLTLEAQQGQKSLDQAR
VDVASIGSVEAEIKQQQRLMQDLQKLTGLNQELAKLDALTPSKQASVDQAKARYVELQRS
ADTLELSWHNAQAAVLAQRLQAGEMCPVCGSVEHPQPAQFVGEEVTKDQVQNARNIEREG
QVVLNQLSNQLEQHNIAIGQCKQQIEQLSVELGQNASMDLGTLQTSMHQFNERLQQLSSI
NLAQLEQSVNELNQRCITGEGKINDLQNQMAANESTIKVNQEQLAKLSASLDAKYSSLEV
LEQDIVAIQKQIAELNSALENAQNHLQQAVLAKANIESQLTTNQQWLNEALDRLSAAKAD
WAQALQASAFEDEAQFLACKVDEAEMQVWQQEIEAFKQTQIKLEQTLADLSSTLKDLALP
DLEGLNVKLNSVQQSYVEARNQLDSTRSLFERLEKVRNDIATLHDKNTKLEDEYKVFGTL
YDVASGKTGSRISLHRFVLGVLLDDVLIQASQRLSLMSKGRYILARKTEGFKGAAGRGLD
LVVEDSYTGKTRDVATLSGGESFMAALALALGLSDVVQSYSGGIRLDTLFIDEGFGSLDP
ESLDLAIQTLVDLQQTGRMIGVISHVSELKEQMAQRIDVEPSRLGSTVSVKSQMAFDS
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctattaaactgacaatgcaggcttttggtccgtttgctcaaacagaaacgatt
gaattcgacaagctgggaactaaccctctgtttcttatcaacggtcctactggttcgggt
aaaacctcgatcctcgatgcgatttgttttgctctttatggtgaaacgacgggtaatgag
cgccagggtattcaaatgcgttgcgatatggcagcgccaacgttattgaccgaagtgacg
ctagagttctctttacacggcaagtcttatcgagtaattcgctcaccagaacaagaagca
ccaaaggcgcgtggtgagggtatgacggtgcgtaagcataccgcagctttgtatgagatt
acggacgaagaaaagctcatcactagcaaaacaacgcaagtaaagacagaagtgaccaat
attattggcttgaacgaaactcagttccgccaagtgatggtgctgccacaaggtaagttt
cgagagttgttacttgcgacgtccaaagagcgtgaagagatctttggtcagctattccaa
acggatatctacaagaagattgaatatgcgctgaaagacaaagcgagtgccattagcaaa
gccaaagacgagtttgataaccaaattcgaggcgcactgcaggttgctggtgtttcttcc
gaagtggagttaacagagcagcgtgaagcgttatctgttcaatttgaatctgtacaaaag
caagagcaagaatctctggcgcaattaaatgcggtcaaaactgatctgcaaaaagcagaa
gcattgagcaatgagtttaaaaagcgcgagcaagccgaaattgcattgaagcaacatttg
gaacagagcgatgctgtctcatcacgtcaattgcagttagacaatgcgaagaaggcaagc
aaggttgagttgccttatgtcacgttacaaaacgcctcaaagcaaacgcaagagcttgag
caaaaggtggctaagctatctcaagatcttactgtggcaaatgacgcggtaaaatccaaa
gaaggcgcattgcaaaccgcgaaagaacaagccgcacaattgccaaaactgacagagcag
caataccaacttgaaggcatgaaaggaaagttggttgaaaagtcagagctagagaaagcc
attaacgcaggtttgacgcaaaaatccgagtttgaagcaacactgaagaaatatagcgct
ctgaaagagaagttaacgctagaggcgcaacaaggtcagaagtcactggatcaagctcga
gtcgatgttgcaagtattggcagtgtagaggctgagataaaacagcaacaacgtttgatg
caagacctacagaaactcactggcttaaaccaagagctagcgaaattggatgcgttgaca
cctagtaaacaagcttcggttgaccaagcaaaagcgcgatatgtagaacttcaacgctca
gcagatacacttgaattgagctggcacaatgctcaagccgctgtattggctcagcgctta
caagccggtgaaatgtgtccggtgtgcggtagtgtagaacaccctcaacccgctcaattt
gttggtgaagaggtcactaaggatcaagttcaaaacgctcgaaatatagagcgagaagga
caagttgtgcttaaccaattgagcaatcagttggagcagcacaatatcgcaatcggacaa
tgcaagcagcagattgagcaactatccgttgagcttggtcaaaacgcatcaatggattta
ggcacgttacaaacgtccatgcatcagttcaacgaacgtttacagcaattgtcatcgatt
aacttggctcagttggaacaaagcgtcaatgagttaaaccagcgttgcatcactggggaa
ggtaagatcaatgatctgcaaaaccagatggcagcaaatgaatcgacgataaaagtgaac
caagagcaattggctaaactctcagcttcgttagatgctaagtactcttctcttgaagtt
cttgagcaagacattgttgcgattcaaaaacagattgcggagttaaattccgctttagaa
aatgcacaaaatcatttgcaacaagcggtgcttgcgaaggccaatattgaaagccaactg
acaaccaatcaacagtggttgaatgaagcactcgatcgtttgagcgcagccaaagctgat
tgggcgcaagcgttgcaggcgagtgcattcgaggatgaagcgcaattcctagcatgtaaa
gttgatgaagccgagatgcaggtttggcagcaagaaattgaggcgttcaaacagactcaa
atcaagctagaacaaacattggcagacttgagttccacgttgaaagacttggcgttgcct
gatttagaaggtcttaacgttaaattaaacagtgttcagcaaagttacgttgaagcgcgt
aatcagcttgatagcacgcgctctttgtttgaacgtctagagaaagtccgcaatgacatc
gcgacgttacatgataagaacactaagttagaagacgaatataaagtgtttggtaccttg
tatgacgttgctagcggtaaaacgggtagtcgtatcagtctgcaccgatttgtccttggt
gtgttattagacgacgtgttgattcaagcgtcacagcgcttaagtctgatgagtaaaggc
cgctatatcttggctcgtaaaactgaaggcttcaaaggtgcggcaggacgaggcttggat
ttggtagttgaggacagctacacaggtaaaacgcgtgatgttgcgacgttatcaggtggt
gaatctttcatggcagcgttggcattagcgctcggtctatctgatgttgtgcagtcgtac
agtggcggtattcgcttggatacgctgtttattgatgaaggttttggtagcttagacccg
gaatctttggatcttgcgattcaaaccttggtcgacttacaacaaacgggtcgcatgatt
ggcgtgatttctcacgtatctgagctgaaagagcaaatggcgcaacgcattgatgttgaa
ccgtcgcgacttggttctacagtttctgtgaagtctcagatggcatttgattcttaa
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integrated database retrieval system
