Vibrio rotiferianus: BSZ04_08635
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Entry
BSZ04_08635 CDS
T05115
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vro
Vibrio rotiferianus
Pathway
vro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSZ04_08635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vro03019
]
BSZ04_08635
Enzymes [BR:
vro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSZ04_08635
Messenger RNA biogenesis [BR:
vro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSZ04_08635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
P-loop_SecA
AAA_19
Helicase_C_2
Helicase_RecD
AAA_22
ERCC3_RAD25_C
UTP25_NTPase-like
IGPS
Motif
Other DBs
NCBI-ProteinID:
ASI95061
LinkDB
All DBs
Position
1:complement(1886841..1888094)
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AA seq
417 aa
AA seq
DB search
MSVNFADLGIEQQLVDTLSGMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLP
IIQTVQQQKRNGTPQALILVPTRELAQQVMDNLTQYATNTDLKIVCVYGGTSIGVQKRNL
EEGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPKDKQ
TMLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGS
RNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKEGKVRALIAT
DVAARGLDIQQLEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAIEN
LLDQRLPQEWLEGFEPSLIEEVEPERNGGARRKSRSSEKRKLKAKLAIHKNRGKNRR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttaatttcgctgatcttggcattgaacaacagctggttgataccctaagtggt
atgaatatcgtgaccccaacgccggtgcaagaaaagtcgattccacacgtattggaaggt
aaagatctactggctgctgcacaaactggtactggtaaaactgcagcatttggcttacct
atcatacaaacggttcagcaacagaaacgtaacggaacaccacaagctttgatccttgtg
cctacacgtgagttagcgcagcaagtgatggataacctgacgcaatacgcgacaaacact
gaccttaagattgtttgtgtttatggtgggacgagcattggtgtacaaaagagaaatcta
gaagaaggcgcagatatccttatcgcgacgccgggtcgtttgcttgaccatttgtttaat
ggcaatgtaaacatctctaaaacgggcgttcttgtgcttgatgaagcagaccgcatgtta
gacatgggcttctggccagatctacaacgtattcttcgccgtttgcctaaagataaacaa
accatgctgttctctgctacgtttgaaaaacgcattaaaactatcgcttataaactgatg
gattctccggttgaagtggaagtttcacctgcaaacacgaccgcagaaaccgtgaagcaa
atggtttacccggtcgataagaagcgtaaacgcgaactgcttgcttacttgattggttct
cgaaactggcagcaggtgttggtatttacaaagaccaagcaaggcagcgatgaactggcg
aaagagcttaagttggatggcattaaagcggtttctatcaacggtgataaatcccagggt
gcgcgacaacgtgcgcttgatgagttcaaagaaggtaaagtgcgtgcgttgattgcaacc
gacgtagcagctcgtggtttagacattcagcaacttgagcaagtggttaactttgatatg
ccatttaaggcggaagactacgtccatcgtattggtcgtacaggtcgcgcaggtaaatct
ggtcttgcggtttctttgatgagccgtgatgaagagtatctattgcatgctatcgaaaat
ctactcgatcaacgtttaccacaagaatggttagaagggtttgaaccaagtctgatcgaa
gaggttgaaccggagcgtaatggtggtgctcgtcgtaagagccgttcatctgaaaaacgt
aaactaaaggctaagttagctatccacaaaaaccgtggtaaaaaccgccgctag
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