Vibrio rotiferianus: BSZ04_11800
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Entry
BSZ04_11800 CDS
T05115
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vro
Vibrio rotiferianus
Pathway
vro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSZ04_11800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vro03019
]
BSZ04_11800
03400 DNA repair and recombination proteins [BR:
vro03400
]
BSZ04_11800
Enzymes [BR:
vro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSZ04_11800
Messenger RNA biogenesis [BR:
vro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSZ04_11800
DNA repair and recombination proteins [BR:
vro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BSZ04_11800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
DDE_3
Motif
Other DBs
NCBI-ProteinID:
ASI95678
LinkDB
All DBs
Position
2:complement(620236..622161)
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AA seq
641 aa
AA seq
DB search
MQSDSLQQTLQSVFGFDSLRSGQQPVIEAVMNGHSAAAIFPTGSGKSLCYQLPATQLPHL
TLVISPLLALMKDQLSFLQSRGIAAASIDSSQSREEAQQVMAGVKNGHIKILMISVERLK
NERFREFIRQIPLSLMVVDEAHCISEWGHNFRPDYLKLPQYQRELNIPQTLLLTATATPA
VIEDMQSKFNIADENITVTGFYRSNLDISVVPCEEENKQTQLNDIITAAPKLPSIVYVTQ
QQTAEQVASSLIRLGINAHAYHAGMKSDIREKIQQQFMDSQIDCIVATIAFGMGVDKSDI
RRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEPSSINYV
LEQIRENTPQWEVMALRLSRDSNIRQLPLKTLLVYLELAKVIEAKYSYFAEYRFKFLQDQ
SFILNQFQGERRQFVEAIFACSTKAKVWCQVDLEALWVNYQSERSRVVAALDYFHQNGWI
ELESKQLTDVYSVLPATQNQEAISQHLAELFQSKEQKDIERIHTMLNLFQSSDCLSYQLA
HYFADHNAPTQCGHCSVCRGQVASFPQPQQVQPELTHLSAWVDEFVQLSPTVISNAAVAR
FLCGISTPIIAQLKASKLRGYGSMANVSFALVLKQVELARA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagtgactcgcttcagcaaacgcttcaatccgtgttcgggtttgactcattaaga
tccggccaacaaccggtgattgaagcagtaatgaacggacactcagccgctgccatcttc
ccaactggctcagggaaatcgctttgctaccaacttcctgctactcagttaccacacctg
acgttggtgatttcaccgcttcttgcattaatgaaagaccaactaagcttcttacaaagc
agaggcattgctgcggcatctatcgacagtagccaaagccgtgaagaagcacagcaggtg
atggctggtgtgaagaatggacatatcaagattttgatgatctcggtggagcgactcaag
aacgaacgttttcgcgagttcattcgtcaaattccgctttctctaatggtggtcgacgaa
gcgcactgtatctcagaatggggtcataacttccgtcctgactaccttaaactgccgcaa
taccaacgtgaactgaatattccgcaaaccctgttgctaaccgcaacagcaacgcctgcg
gttattgaagacatgcaaagcaagtttaatatcgctgacgagaatattacggttactggt
ttctatcgctctaatctcgatatttctgtggtgccttgcgaggaagaaaataagcaaaca
cagctgaatgacatcattactgcggcccctaaactgccgagtatcgtgtacgtaactcaa
cagcaaaccgcagagcaagttgctagctcactgattcgtttaggcatcaatgctcatgct
taccacgcaggtatgaaaagcgacatacgcgagaaaatccaacagcagtttatggactca
caaatcgactgcattgtcgccacaatcgcgtttggtatgggggtagataaatccgacatt
cgtcgtgttattcacttcgatttaccgaaatctatcgaaaactacgcacaagaaatcggg
cgcgctggacgagatgggcagcgctcggagtgtattcttttggggaatacttctggctta
acagtattagagaactttgtttacggtgacacgccagagccaagctcaatcaattatgta
ttagaacaaattcgcgagaacacgcctcagtgggaagtgatggcgctacgcttatctcgc
gacagcaatattcgccaactgccactaaagaccttgttggtttacctagagttggcaaaa
gtgattgaagccaaatacagctatttcgcggaatatcgcttcaagttcttacaagaccaa
tcttttatcctcaatcagttccaaggtgaacgacgtcagtttgttgaagctatttttgct
tgttcaaccaaagcgaaagtgtggtgccaagtggatttagaagccttgtgggtgaactat
caatctgagcgtagtcgtgtagttgcggcgcttgattacttccaccaaaacggttggatt
gaattagaaagcaaacagctcacggatgtgtattcggttctccctgcgactcaaaatcaa
gaagcgatttctcagcatttggctgagctgttccaatccaaagaacagaaagacattgaa
cgaattcatactatgttgaatctgttccaatcatcggactgcttgagctatcagttagcg
cattattttgctgatcacaatgcaccaacgcaatgtggccactgttctgtgtgtcgtgga
caagtcgcatcattccctcagccacaacaagtacaacctgagttgactcacctatccgct
tgggttgatgaatttgtccaactttcaccaacggtgattagcaatgccgctgtggcgcgc
ttcctgtgtgggatcagcacgccaatcattgctcagcttaaagccagcaaactgcgaggc
tatggttcaatggcgaatgtctcttttgcactggtactaaagcaggttgagttagcacga
gcttag
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