Vibrio rotiferianus: BSZ04_11995
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Entry
BSZ04_11995 CDS
T05115
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vro
Vibrio rotiferianus
Pathway
vro03030
DNA replication
vro03430
Mismatch repair
vro03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BSZ04_11995
03430 Mismatch repair
BSZ04_11995
03440 Homologous recombination
BSZ04_11995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vro03032
]
BSZ04_11995
03400 DNA repair and recombination proteins [BR:
vro03400
]
BSZ04_11995
Enzymes [BR:
vro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BSZ04_11995
DNA replication proteins [BR:
vro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BSZ04_11995
DNA repair and recombination proteins [BR:
vro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BSZ04_11995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Imm64
Motif
Other DBs
NCBI-ProteinID:
ASI95715
LinkDB
All DBs
Position
2:656550..660029
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLRIHSDFSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGN
GVKPIIGADFKMQSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQPVIDKAW
LAELSEGLIVLSGAKNGEIGKALLKGNRKVVESCVAFYQEYFPDRFYLELVRTGRSDEET
YLHFAVELAEETQLPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYL
RTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGMEETEFLVMKSREGL
EERLEFLFPDEAERKERRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFKAEPA
LPELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVQIESIPLVDPASFRLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFEEGAVANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVDENGAIVYGIGAIKG
VGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAALMA
SLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAWPEKVWLEGERETLGLY
LTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGLMTLDD
RSGRMEVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKYA
RGLSVSIDAQQVNDKFFEQFTRILEPHKAGTVPVNVYYQRADARARLTLGTEWRVTPSDT
LLDDLKQLLGKGQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcccaagttcattcacctaagaatccacagtgatttctctatggtggatggt
atcaacaaagttccaccgctcgttaagaaagtcgccgaactcggcatgcctgcaatggca
ttgaccgatttcactaacctatgtggtttggtgaagtactacggcactgcgcacggcaat
ggtgtgaagccaatcatcggtgctgatttcaaaatgcaatcggatgagtttggcgaggag
ctgacgcaattaacgctactagcagcaaacaatgaaggttacaaaaaccttacgttgctg
atttcaaaagcttaccttcgtggtcacgtacagcatcaaccagttatcgataaagcttgg
ttggcagagttgtcagaaggcttgattgtgctttctggtgcaaaaaacggtgaaatcggt
aaagcgttacttaaaggtaaccgcaaagtggtggaaagctgtgtggctttttaccaagag
tatttcccagatcgtttctatctagaactggttcgtactggtcgttcagacgaagaaacg
tacctgcattttgccgttgaattagcagaagaaactcaactaccggttgtagcgaccaac
gaagtcgttttcatcagtgaagacctatttgacgcgcacgaaatccgtgtggcgattcac
gatggttacacgctagaagatccgcgtcgtccaaagaactatagtccagaacagtattta
cgtactgaagaggaaatgtgtgagctgtttgccgacattcctgaagcgctggaaaacagt
gtcgaaattgctaaacgctgtaacgtgacggtacgtcttggcgaatacttcctacctgcc
ttcccaaccgaagggatggaagaaaccgaattcttggtaatgaaatcccgtgaaggcttg
gaagagcgtcttgaattcttattcccagacgaagctgagcgtaaagaacgtcgaccagaa
tacgatgaccgcctgcaaatcgaactcgatgtaatcaaccaaatgggattccctggttac
ttcttgatcgtaatggagtttatccagtggtcgaaagacaacgcgattccggtggggccg
ggtcgtggttcgggtgccggttctttggtggcatacgcactaaaaatcaccgaccttgac
ccactggaatatgaccttcttttcgaacgtttcttgaacccagaacgtgtctccatgccc
gatttcgatgtcgacttctgtatggataagcgtgatcaagtaattgaccacgttgcggaa
atgtatggtcgtgatgcggtatcgcagatcatcactttcggtaccatggcagcaaaagcg
gtaattcgagatgttggccgtgtacttggccatccatttggtttcgttgatcgtatttcc
aaattggttccgcctgacccaggcatgacgctagagaaagcgtttaaagctgaacctgca
ttgccagaactttacgacgccgatgaagaagtaaaagagctgatcgacaagtgtcgtatc
cttgaaggttgtacacgaaatgccggtaagcacgcgggtggtgttgtaatctcgccaacc
acgatcacagactttgcaccgatttatgccgatgctgaaggccacttcccggtgacacag
ttcgataagaacgacgtagaaaccgcgggtctggttaagtttgacttcttggggctacgt
accctaactattatcgattgggcattgggactgattaacccgcgactagagcgtgaaggt
aaagagccagttcagatcgagtctatcccattggtggacccggcatctttccgactgttg
caaaactctgaaaccaccgcggtattccagcttgaatcacgcggtatgaaagagctaatc
aaacgtctgcaaccagactgtttcgaagatatcatcgcattggttgcccttttccgccct
ggcccgctacagtcgggcatggtagataactttatcgaccgtaagcacggccgagaagcg
atctcttatcctgatgaaaagtggcaacatgaatcgctaaaagaaattctcgatccaact
tacggcatcattctgtatcaggaacaggtaatgcagatcgcacaggtactgtctggctac
acccttggtggtgcggacatgcttcgtcgtgcgatgggtaagaaaaagccggaagagatg
gcgaagcagcgtgctaccttcgaagagggcgcggttgctaacggcgtcgatggcgaattg
gcgatgaagatcttcgacttggtagaaaagttcgcgggttacggctttaacaaatcacac
tcggctgcctatgcgttggtttcttaccaaacgttatggttaaaaacgcactatcctgca
gaatttatggcagcggtaatgaccgccgatatggataacaccgaaaaggtcgttggtctt
gtggacgagtgtttccgcatgaaactgacagtcttgccacctgatattaactcgggcttg
tatcgctttaacgtggatgaaaatggcgcgattgtttatggtatcggtgcgataaaaggc
gtgggtgaaggccccattgatgcgatattagaagcgcgtaataaaggcggtcacttcatc
gacttatttgacttctgtgcacgtatcgatctgaaaaaggtcaacaaacgtgttatcgaa
aaactgatttatgctggagcgctagataggctaggcccacaccgagcagcgttgatggcc
tcgctcaatgacgcagtaaaagcggcaagccaacaccaccaagctgaagcatttggtcaa
accgacatgttcggtgtactgactgatgcgccggaagaagtagagcataaatatactcag
gtgccagcttggcctgagaaagtatggttagagggtgaacgtgagacgctcggtttatat
ttgaccgggcacccagttaacgcatacataaaggaactaaataagtacgttagttgtcga
ctaaaagacgccactccaactcgccgtgatcaatccgtgaccgtggcgggcttggtaatt
gcagctcgcgtaatgacaactaaacgtggtacgcgcatcggtttgatgactttggatgat
cgaagtggtcgaatggaggtgatgttgttctcagatgcgcttgatagatatgcggaactt
ctcgaaaaagataaaattttggtcgtttctggacaggtcagctttgatgacttcaatggt
ggccttaaaatgtcggcgcgtgaagttatggatctcggcagtgctcgtgaaaagtatgca
cgaggtttgtcagtatcaattgatgctcaacaggtaaatgacaaattctttgagcaattt
actcgtattctagagccacataaagccgggaccgtacctgtcaatgtatactatcagcgt
gccgacgccagagcgcggttaactttgggcaccgaatggcgagtaacgccaagtgataca
ttactcgatgatttaaaacagttgcttggcaaaggccaggtagaactcgaatttaactaa
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