Vibrio rotiferianus: BSZ04_16495
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Entry
BSZ04_16495 CDS
T05115
Name
(GenBank) helix-turn-helix transcriptional regulator
KO
K20918
LuxR family transcriptional regulator, positive regulator of biofilm formation
Organism
vro
Vibrio rotiferianus
Pathway
vro05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vro00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
BSZ04_16495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vro03000
]
BSZ04_16495
Transcription factors [BR:
vro03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
BSZ04_16495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GerE
Sigma70_r4_2
VpsT-like_REC
HTH_VMAP-M9
HTH_40
HTH_23
HTH_24
Trans_reg_C
HTH_38
Sigma70_r4
Motif
Other DBs
NCBI-ProteinID:
ASI96550
LinkDB
All DBs
Position
2:1610499..1611164
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AA seq
221 aa
AA seq
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MHGRANNSGRPSVLLVGDHCIQNQFLRREIEKSNKYKFTRKSIHDFSNLTIQGKFDIVLV
SYAQLEKYDYHGFISACTAEADLIVYDVPNGIVELKLAASLNLKGMLYEDAPIEHLTRCI
QAVENQELWLPRKVMEKMLSDIRPYAMNSQDISSTLTKREKQILDRLVQGHSNLQIAEEL
FVAESTVKTHVYKLYKKLNVSNRKEAVQKASQPFHYEFKPH
NT seq
666 nt
NT seq
+upstream
nt +downstream
nt
atgcacggtagggcaaacaacagcggcagacccagtgttcttttggttggagatcattgt
atacagaatcagtttttacgccgcgaaatagagaaaagtaataagtataagttcacaagg
aaaagcattcatgatttcagcaacttaactatccaaggcaaattcgatattgtgttggta
tcctacgcgcaattagaaaagtatgattatcatggctttatttctgcctgcacagcggag
gcagacctgatcgtttacgacgtacctaatggtatcgttgagcttaaactcgctgcgagt
ttaaatctcaaggggatgctttatgaagatgcccctattgagcacttaacgcgctgcata
caagcggtcgaaaaccaagagctctggctaccgagaaaagtcatggaaaaaatgctcagc
gacattcgcccttatgcaatgaactcccaggatatcagctcaacactaaccaaacgtgag
aagcagatacttgatcggctcgttcaagggcattctaacctgcaaatcgcggaagagttg
tttgttgcggaaagcacagtaaagacccacgtttataaactgtacaaaaaactcaatgtc
agtaaccgaaaagaagccgttcagaaagcaagccaaccgtttcattacgaatttaagcca
cactaa
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